RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 TMEM217Q8N7C4 229 aa7.04□□□□□ -1.28
USP28-205ENST00000537706 MAPKAPK5-AS1Q8N8E1 139 aa7.04□□□□□ -1.28
USP28-205ENST00000537706 OR5A2Q8NGI9 324 aa7.04□□□□□ -1.28
USP28-205ENST00000537706 SNX22Q96L94 193 aa7.04□□□□□ -1.28
USP28-205ENST00000537706 ERMAPQ96PL5 475 aaPredicted RBP7.04□□□□□ -1.28
USP28-205ENST00000537706 NIPAL2Q9H841 368 aa7.04□□□□□ -1.28
USP28-205ENST00000537706 CMC2Q9NRP2 79 aa7.04□□□□□ -1.28
USP28-205ENST00000537706 EXOGQ9Y2C4 368 aaKnown RBP7.04□□□□□ -1.28
USP28-205ENST00000537706 UBE2J1Q9Y385 318 aaPredicted RBP7.04□□□□□ -1.28
USP28-205ENST00000537706 PRSS29PA6NIE9 313 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 LINC01548A6NM66 108 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 GPX5O75715 221 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 IGLV1-47P01700 117 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 LIMS3P0CW19 117 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 LIMS4P0CW20 117 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 SOX6P35712 828 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 RAB7AP51149 207 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 Q6ZNX1 250 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 OR52N1Q8NH53 320 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 MYOZ3Q8TDC0 251 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 RNF183Q96D59 192 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 MRM2Q9UI43 246 aaKnown RBP7.03□□□□□ -1.28
USP28-205ENST00000537706 WSB1Q9Y6I7 421 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 FUOMA2VDF0 154 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 RIIAD1A6NNX1 92 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 ZNF670-ZNF695F2Z2N8 137 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 APOL3O95236 402 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 IGKV1D-33P01593 117 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 IGKV1-33P01594 117 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 ANOS1P23352 680 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 CD34P28906 385 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 SLC6A6P31641 620 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 CFHR3Q02985 330 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 TPBGQ13641 420 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 RGS21Q2M5E4 152 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 PRAMEF5Q5TYX0 476 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 LCN1P1Q5VSP4 162 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 LIPKQ5VXJ0 399 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 HAPLN4Q86UW8 402 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 ZNF573Q86YE8 665 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 CPOQ8IVL8 374 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 OR8H3Q8N146 312 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 ZNF485Q8NCK3 441 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 BBS1Q8NFJ9 593 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 OR4D6Q8NGJ1 314 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 UFD1Q92890 307 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 TMEM106AQ96A25 262 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 NMNAT3Q96T66 252 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 IFT27Q9BW83 186 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 RNF167Q9H6Y7 350 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 H2AFY2Q9P0M6 372 aaPredicted RBP7.03□□□□□ -1.28
USP28-205ENST00000537706 ZNF580Q9UK33 172 aa7.03□□□□□ -1.28
USP28-205ENST00000537706 A0A075B6Q4 140 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 TRGV10A0A0A0MS01 117 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 LY6LH3BQJ8 138 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 J3QRE1 110 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 J3QT63 122 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 NOS1APO75052 506 aaPredicted RBP7.02□□□□□ -1.29
USP28-205ENST00000537706 SULT1C4O75897 302 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 IFNGP01579 166 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 ZNF3P17036 446 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 CDK2P24941 298 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 CD40LGP29965 261 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 KLHL12Q53G59 568 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 OR2G6Q5TZ20 316 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 MOB3CQ70IA8 216 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 SHFQ7M4L6 423 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 ITFG2Q969R8 447 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 ZNF488Q96MN9 340 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 C6orf62Q9GZU0 229 aaPredicted RBP7.02□□□□□ -1.29
USP28-205ENST00000537706 EXOSC4Q9NPD3 245 aaKnown RBP7.02□□□□□ -1.29
USP28-205ENST00000537706 MRPL22Q9NWU5 206 aaKnown RBP7.02□□□□□ -1.29
USP28-205ENST00000537706 ERVK13-1Q9NX77 482 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 SSR3Q9UNL2 185 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 PEX16Q9Y5Y5 336 aa7.02□□□□□ -1.29
USP28-205ENST00000537706 CCDC182A6NF36 153 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 ATF4P18848 351 aaPredicted RBP7.01□□□□□ -1.29
USP28-205ENST00000537706 SLC2A5P22732 501 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 S100A5P33763 92 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 ETV6P41212 452 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 MAP2K3P46734 347 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 ZNF121P58317 390 aaPredicted RBP7.01□□□□□ -1.29
USP28-205ENST00000537706 RBMY1FQ15415 496 aaKnown RBP7.01□□□□□ -1.29
USP28-205ENST00000537706 GRK1Q15835 563 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 PLCXD3Q63HM9 321 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 CD200R1LQ6Q8B3 271 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 HEPN1Q6WQI6 88 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 LINC00322Q6ZN03 302 aaPredicted RBP7.01□□□□□ -1.29
USP28-205ENST00000537706 Q8N402 240 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 MINDY2Q8NBR6 621 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 OR9G1Q8NH87 305 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 FGF23Q9GZV9 251 aaPredicted RBP7.01□□□□□ -1.29
USP28-205ENST00000537706 PLEKHA3Q9HB20 300 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 ZNF286AQ9HBT8 521 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 BRD7Q9NPI1 651 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 TAS2R3Q9NYW6 316 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 COPS3Q9UNS2 423 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 FAM172BPA6NC97 362 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 RGS11O94810 467 aa7.01□□□□□ -1.29
USP28-205ENST00000537706 IL1AP01583 271 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms