RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 IL2RGP31785 369 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 UCP3P55916 312 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 UBE2V2Q15819 145 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 DRAM2Q6UX65 266 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 BTNL3Q6UXE8 466 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 LYG2Q86SG7 212 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 ZNF799Q96GE5 643 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 OR8B4Q96RC9 309 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 CDH20Q9HBT6 801 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 AURKAIP1Q9NWT8 199 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 DUSP13Q9UII6 198 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 RHBDD3Q9Y3P4 386 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 TRAV1-2A0A0B4J238 106 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 H0YIZ8 118 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 LMX1BO60663 402 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 CD74P04233 296 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 CXCL1P09341 107 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 GLRA1P23415 457 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 CTSSP25774 331 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 GRNP28799 593 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 RPL12P30050 165 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 FABP6P51161 128 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 ENDOGQ14249 297 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 WDR38Q5JTN6 314 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 MYPOPQ86VE0 399 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 SLC35G3Q8N808 338 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 OR13C3Q8NGS6 347 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 OR4K15Q8NH41 348 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 LINC01560Q8TB33 94 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 TMEM54Q969K7 222 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 SH3BGRL3Q9H299 93 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 CACFD1Q9UGQ2 172 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 FOXD3Q9UJU5 478 aaPredicted RBP7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 OR52A1Q9UKL2 312 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 CARHSP1Q9Y2V2 147 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 PAM16Q9Y3D7 125 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 SYT7O43581 403 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 IL18BPO95998 194 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 AMY2BP19961 511 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 PCSK4Q6UW60 755 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 SPTSSAQ969W0 71 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 NTNG2Q96CW9 530 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 MRPL37Q9BZE1 423 aaKnown RBP7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 TUBD1Q9UJT1 453 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 TIMM10BQ9Y5J6 103 aa7.47□□□□□ -1.21
LIMCH1-209ENST00000509277 UTP20O75691 2785 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 A0A1W2PPQ1 181 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 SEC14L6B5MCN3 397 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 SIAH2O43255 324 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 HIST1H2BKO60814 126 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 HIST1H2BJP06899 126 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 HIST1H2BOP23527 126 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 HTR2CP28335 458 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 CALCRP30988 508 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 HIST1H2BBP33778 126 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 WNT5AP41221 380 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 MMP16P51512 607 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 TMEM33P57088 247 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 HIST1H2BDP58876 126 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 ERVS71-1P61550 626 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 HIST1H2BCP62807 126 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 EIF5AP63241 154 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 MRPS34P82930 218 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 NHLH2Q02577 135 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 HIST2H2BEQ16778 126 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 IL34Q6ZMJ4 242 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 BHLHA15Q7RTS1 189 aaPredicted RBP7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 MRGPRGQ86SM5 289 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 OR10S1Q8NGN2 331 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 ASB13Q8WXK3 278 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 HIST1H2BHQ93079 126 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 HIST1H2BNQ99877 126 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 HIST1H2BMQ99879 126 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 CHST5Q9GZS9 411 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 PATZ1Q9HBE1 687 aaKnown RBP7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 PLSCR2Q9NRY7 297 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 LAMP3Q9UQV4 416 aa7.46□□□□□ -1.21
LIMCH1-209ENST00000509277 TNFSF13O75888 250 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 NGFP01138 241 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 AGAP20933 346 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 FGF7P21781 194 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 ANOS1P23352 680 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 CD200P41217 278 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 RPS23P62266 143 aaKnown RBP7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 RPS11P62280 158 aaKnown RBP eCLIP7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 ACSM1Q08AH1 577 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 ADIRFQ15847 76 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 ZNF474Q6S9Z5 364 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 ZNF66Q6ZN08 573 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 OR1F12Q8NHA8 337 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 SEH1LQ96EE3 360 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 SLC25A21Q9BQT8 299 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 OR2H1Q9GZK4 316 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 MAGT1Q9H0U3 335 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 SEBOXQ9HB31 216 aaPredicted RBP7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 GPR84Q9NQS5 396 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 FRRS1LQ9P0K9 344 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 POLQO75417 2590 aa7.46□□□□□ -1.22
LIMCH1-209ENST00000509277 ARHGAP21Q5T5U3 1957 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms