RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 IGHG2P01859 326 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 AMY1AP04745 511 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 AMY2AP04746 511 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 GLAP06280 429 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 SNRNP70P08621 437 aaKnown RBP5.62□□□□□ -1.51
VPS41-208ENST00000448833 IGLL1P15814 213 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 JUNBP17275 347 aaPredicted RBP5.62□□□□□ -1.51
VPS41-208ENST00000448833 MYCNOSP40205 109 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 RBM11P57052 281 aaKnown RBP5.62□□□□□ -1.51
VPS41-208ENST00000448833 ZNF816Q0VGE8 651 aaPredicted RBP5.62□□□□□ -1.51
VPS41-208ENST00000448833 EBI3Q14213 229 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 TMEM95Q3KNT9 176 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 YIF1BQ5BJH7 314 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 DEFB121Q5J5C9 76 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 DDI2Q5TDH0 399 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 RSBN1Q5VWQ0 802 aaPredicted RBP5.62□□□□□ -1.51
VPS41-208ENST00000448833 TTC23Q5W5X9 447 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 TEX38Q6PEX7 206 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 SLC35E3Q7Z769 313 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 TGIF2LXQ8IUE1 241 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 PQLC1Q8N2U9 271 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 LINC00311Q8N616 119 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 DRAM1Q8N682 238 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 C5orf56Q8N8D9 126 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 SUMF2Q8NBJ7 301 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 SETD9Q8NE22 299 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 OR2T10Q8NGZ9 312 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 OR56B4Q8NH76 319 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 ARL11Q969Q4 196 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 SMIM19Q96E16 107 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 CHCHD6Q9BRQ6 235 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 PPIL3Q9H2H8 161 aaKnown RBP5.62□□□□□ -1.51
VPS41-208ENST00000448833 AMBNQ9NP70 447 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.62□□□□□ -1.51
VPS41-208ENST00000448833 SMPD3Q9NY59 655 aaPredicted RBP5.62□□□□□ -1.51
VPS41-208ENST00000448833 EXOSC1Q9Y3B2 195 aaKnown RBP5.62□□□□□ -1.51
VPS41-208ENST00000448833 LRRC42Q9Y546 428 aa5.62□□□□□ -1.51
VPS41-208ENST00000448833 SIRT4Q9Y6E7 314 aaPredicted RBP5.62□□□□□ -1.51
VPS41-208ENST00000448833 A0A1W2PPI3 338 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 FAM90A10PA6NDY2 464 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 FAM90A7PA6NKC0 464 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 NCBP2LA6PVI3 153 aaKnown RBP5.61□□□□□ -1.51
VPS41-208ENST00000448833 NUDT19A8MXV4 375 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 FAM90A23PA8MXZ1 464 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 E9PI62 339 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 EBAG9O00559 213 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 SDCBPO00560 298 aaPredicted RBP5.61□□□□□ -1.51
VPS41-208ENST00000448833 HSD17B6O14756 317 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 RAMP3O60896 148 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 MPIG6BO95866 241 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 MOSP00540 346 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 IGKV1D-33P01593 117 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 IGKV1-33P01594 117 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 PRB2P02812 416 aaPredicted RBP5.61□□□□□ -1.51
VPS41-208ENST00000448833 LIMS3P0CW19 117 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 LIMS4P0CW20 117 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 OR5H8P0DN80 308 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 CD1BP29016 333 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 GDNFP39905 211 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 SOX2P48431 317 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 TAS2R43P59537 309 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 RPL23AP62750 156 aaKnown RBP5.61□□□□□ -1.51
VPS41-208ENST00000448833 COL7A1Q02388 2944 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 EGFEM1PQ0D2K5 195 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 RIPK1Q13546 671 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 ZSCAN26Q16670 478 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 PNLIPRP3Q17RR3 467 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 PIGYQ3MUY2 71 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 Q499Y3 187 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 TCTEX1D4Q5JR98 221 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 ATAD3CQ5T2N8 411 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 C6orf183Q5T699 404 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 BAIAP2L2Q6UXY1 529 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 MOB3BQ86TA1 216 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 ZNF554Q86TJ5 538 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 IZUMO1Q8IYV9 350 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 OR13A1Q8NGR1 328 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 RFESDQ8TAC1 157 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 MRGPRDQ8TDS7 321 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 NEK7Q8TDX7 302 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 TMEM80Q96HE8 168 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 CITED4Q96RK1 184 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 RASL11BQ9BPW5 248 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 ZNF649Q9BS31 505 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 S100A14Q9HCY8 104 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 LIN7CQ9NUP9 197 aaKnown RBP5.61□□□□□ -1.51
VPS41-208ENST00000448833 TAS2R4Q9NYW5 299 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 KCNIP1Q9NZI2 227 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 GHRLQ9UBU3 117 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 TRAPPC2LQ9UL33 140 aa5.61□□□□□ -1.51
VPS41-208ENST00000448833 DIMT1Q9UNQ2 313 aaKnown RBP5.61□□□□□ -1.51
VPS41-208ENST00000448833 TMA7Q9Y2S6 64 aaKnown RBP5.61□□□□□ -1.51
VPS41-208ENST00000448833 IGHV1-3A0A0C4DH29 117 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 ERICH4A6NGS2 130 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 A6NHS1 94 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 AIPO00170 330 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 GEMIN2O14893 280 aaKnown RBP5.6□□□□□ -1.51
VPS41-208ENST00000448833 CDRT1O95170 752 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 BAG2O95816 211 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 MT-ND4P03905 459 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms