RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 HBG2P69892 147 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 HLA-DRB3P79483 266 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 SSBP1Q04837 148 aaKnown RBP4.78□□□□□ -1.64
LIMA1-203ENST00000547825 ANKRD55Q3KP44 614 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 C19orf54Q5BKX5 351 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 FIP1L1Q6UN15 594 aaKnown RBP4.78□□□□□ -1.64
LIMA1-203ENST00000547825 SSX7Q7RTT5 188 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 SLC26A10Q8NG04 563 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 OR5L2Q8NGL0 311 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 DNASE2BQ8WZ79 361 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 ZNF799Q96GE5 643 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 OR51I2Q9H344 312 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 ZDHHC11Q9H8X9 412 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 FGF21Q9NSA1 209 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 FUT9Q9Y231 359 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 SLCO1B1Q9Y6L6 691 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 ITPR1Q14643 2758 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 FTCDNL1E5RQL4 147 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 MT-ATP6P00846 226 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 FTH1P19P0C7X4 201 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 PPICP45877 212 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 CSNK1EP49674 416 aaKnown RBP4.78□□□□□ -1.65
LIMA1-203ENST00000547825 SLC25A1P53007 311 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 ZNF90Q03938 601 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 C17orf67Q0P5P2 114 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 SPINK9Q5DT21 86 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 PMS2CLQ68D20 193 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 DOK3Q7L591 496 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 CDC20BQ86Y33 519 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 FAM58AQ8N1B3 248 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 NUDT10Q8NFP7 164 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 ANKRD9Q96BM1 317 aaPredicted RBP4.78□□□□□ -1.65
LIMA1-203ENST00000547825 GNPNAT1Q96EK6 184 aaPredicted RBP4.78□□□□□ -1.65
LIMA1-203ENST00000547825 NUDT11Q96G61 164 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 TWSG1Q9GZX9 223 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 ALX4Q9H161 411 aaPredicted RBP4.78□□□□□ -1.65
LIMA1-203ENST00000547825 SLC25A22Q9H936 323 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 LMAN1LQ9HAT1 526 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 SEPSECSQ9HD40 501 aaKnown RBP4.78□□□□□ -1.65
LIMA1-203ENST00000547825 CBLN4Q9NTU7 201 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 RNF24Q9Y225 148 aa4.78□□□□□ -1.65
LIMA1-203ENST00000547825 KIAA2026Q5HYC2 2103 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 A0A087WWL8 130 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 TRAV39A0A0B4J263 110 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 A8MXE2 369 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 DNPH1O43598 174 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 TCF21O43680 179 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 CDC14BO60729 498 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 APOA2P02652 100 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 SLC25A4P12235 298 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 TBPP20226 339 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 PMCHP20382 165 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 KITLGP21583 273 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 MSR1P21757 451 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 IL2RGP31785 369 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 DRD3P35462 400 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 RABIFP47224 123 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 HIST1H3AP68431 136 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 PLGLB1Q02325 96 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ZNF92Q03936 586 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ZNF154Q13106 437 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ZNF345Q14585 488 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 PCOLCEQ15113 449 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ZIC1Q15915 447 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 DHRS7BQ6IAN0 325 aaPredicted RBP4.77□□□□□ -1.65
LIMA1-203ENST00000547825 PIP4P1Q86T03 277 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 SLC43A2Q8N370 569 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 GJC3Q8NFK1 279 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 OR11L1Q8NGX0 322 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 CPT1CQ8TCG5 803 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 TDRD6O60522 2096 aaKnown RBP4.77□□□□□ -1.65
LIMA1-203ENST00000547825 UBE2L5PA0A1B0GUS4 154 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 C9J4A7 227 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 E9PLN8 166 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 M0R143 59 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 LYPD3O95274 346 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 KRASP01116 189 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ATP6V0CP27449 155 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 HSD17B7P56937 341 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 FZD2Q14332 565 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ZNF684Q5T5D7 378 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 LANCL3Q6ZV70 420 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ASB13Q8WXK3 278 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ERGIC1Q969X5 290 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ZNF524Q96C55 264 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ATP5SQ99766 215 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 VKORC1Q9BQB6 163 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 PCED1AQ9H1Q7 454 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 KCNIP1Q9NZI2 227 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 IGHV1OR15-9A0A0B4J2B8 117 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 PQLC2LA1A4F0 135 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 B4E171 279 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 ZNF749O43361 778 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 DUX1O43812 170 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 GRPP07492 148 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 MST1P26927 711 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 TSPAN7P41732 249 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 GALR1P47211 349 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 DYNLT3P51808 116 aa4.77□□□□□ -1.65
LIMA1-203ENST00000547825 OR1D5P58170 312 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms