RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 LIMS4P0CW20 117 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 TMEM225BP0DP42 221 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF44P15621 663 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 MYL12AP19105 171 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 RAB3AP20336 220 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 PAX6P26367 422 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 KIR2DS4P43632 304 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 ZP1P60852 638 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 SCN1BQ07699 218 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 KISS1Q15726 138 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 FAM189A2Q15884 450 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 SSX2Q16385 188 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 C2orf68Q2NKX9 166 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 CCDC58Q4VC31 144 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 PLA1AQ53H76 456 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 MINOS1Q5TGZ0 78 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF691Q5VV52 312 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 OR52W1Q6IF63 320 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 CCBE1Q6UXH8 406 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 TMPRSS11AQ6ZMR5 421 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 OR2T6Q8NHC8 308 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 PIFOQ8TCI5 191 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 GPR148Q8TDV2 347 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 CLEC7AQ9BXN2 247 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 TMEM133Q9H2Q1 129 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 FGF20Q9NP95 211 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 C8orf4Q9NR00 106 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 TAS2R3Q9NYW6 316 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 PITPNC1Q9UKF7 332 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 TCF19Q9Y242 345 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 MINOS1-NBL1R4GNA1 71 aa5.48□□□□□ -1.53
CCDC88A-213ENST00000476903 A0A0G2JK05 382 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 H3BUI4 141 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF561-AS1K7EIQ3 104 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 F2RL2O00254 374 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 SLC33A1O00400 549 aaPredicted RBP5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 DEGS1O15121 323 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 CHST1O43916 411 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 WBP4O75554 376 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 CD2P06729 351 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 CPEP16870 476 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 DCKP27707 260 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 HTR1DP28221 377 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 PTGFRP43088 359 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 GLIPR1P48060 266 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 MTNR1BP49286 362 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 ETV1P50549 477 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 DYNLT3P51808 116 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 ARHGDIBP52566 201 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 GTF2A1P52655 376 aaPredicted RBP5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 EFNB2P52799 333 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 PPP3R1P63098 170 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 AESQ08117 197 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 IL18R1Q13478 541 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 MED21Q13503 144 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 HERPUD1Q15011 391 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 CDK5R1Q15078 307 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 KRBOX4Q5JUW0 171 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 PRAMEF5Q5TYX0 476 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 TTC23Q5W5X9 447 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 ELP2Q6IA86 826 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF529Q6P280 563 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 Q6P435 159 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 RPL22L1Q6P5R6 122 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 HEPN1Q6WQI6 88 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 Q6ZTK2 550 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 RNF144BQ7Z419 303 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 RTN4RL2Q86UN3 420 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 SATL1Q86VE3 508 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 DYNAPQ8N1N2 210 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 ABHD12Q8N2K0 398 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 PACRGLQ8N7B6 248 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 SETD9Q8NE22 299 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 PXT1Q8NFP0 134 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 NDNFQ8TB73 568 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 CNIH3Q8TBE1 160 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF596Q8TC21 504 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 CYGBQ8WWM9 190 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 CORO2AQ92828 525 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 GPER1Q99527 375 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 NKX3-1Q99801 234 aaPredicted RBP5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 FAM192AQ9GZU8 254 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 TAS2R4Q9NYW5 299 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 OR6C3Q9NZP0 311 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 SIGLEC9Q9Y336 463 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 EXOSC1Q9Y3B2 195 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 HILPDAQ9Y5L2 63 aa5.47□□□□□ -1.53
CCDC88A-213ENST00000476903 VWFP04275 2813 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 ODAMA1E959 279 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 A6NDX4 124 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 ZNF729A6NN14 1252 aaPredicted RBP5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 H0YJX3 145 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 J3KRW8 73 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 GABRPO00591 440 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 PLXNB1O43157 2135 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 MMP23AO75900 390 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 CLIC3O95833 236 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 ALDOBP05062 364 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 CSF1P09603 554 aa5.46□□□□□ -1.54
CCDC88A-213ENST00000476903 VSIG10L2P0DP72 767 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms