RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 FAM19A5Q7Z5A7 132 aaPredicted RBP2.98□□□□□ -1.93
VPS13D-207ENST00000476169 MTERF4Q7Z6M4 381 aaKnown RBP2.98□□□□□ -1.93
VPS13D-207ENST00000476169 COMMD7Q86VX2 200 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 ENKURQ8TC29 256 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 CCL17Q92583 94 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 TLCD1Q96CP7 247 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 OPTNQ96CV9 577 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 MRPL48Q96GC5 212 aaKnown RBP2.98□□□□□ -1.93
VPS13D-207ENST00000476169 SMARCD1Q96GM5 515 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 BMFQ96LC9 184 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 CAMK2N2Q96S95 79 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 KRTAP2-2Q9BYT5 123 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 MMP26Q9NRE1 261 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 FARSAQ9Y285 508 aaKnown RBP2.98□□□□□ -1.93
VPS13D-207ENST00000476169 SAMHD1Q9Y3Z3 626 aaKnown RBP2.98□□□□□ -1.93
VPS13D-207ENST00000476169 BCL9O00512 1426 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 SMG6Q86US8 1419 aaKnown RBP2.98□□□□□ -1.93
VPS13D-207ENST00000476169 PIK3C2AO00443 1686 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 LMO7Q8WWI1 1683 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 ALS2Q96Q42 1657 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 KIF1BO60333 1816 aa2.98□□□□□ -1.93
VPS13D-207ENST00000476169 KDM6AO15550 1401 aaPredicted RBP2.97□□□□□ -1.93
VPS13D-207ENST00000476169 A0A0G2JMP0 313 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 A0A0X1KG70 313 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 A0A1B0GXF2 115 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 A6NDX4 124 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 KCNK1O00180 336 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 TRAF3IP2O43734 574 aaPredicted RBP2.97□□□□□ -1.93
VPS13D-207ENST00000476169 ZNF189O75820 626 aaPredicted RBP2.97□□□□□ -1.93
VPS13D-207ENST00000476169 GATBO75879 557 aaKnown RBP2.97□□□□□ -1.93
VPS13D-207ENST00000476169 OR2A4O95047 310 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 KRT75O95678 551 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 IFNA16P05015 189 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 CFL1P23528 166 aaKnown RBP2.97□□□□□ -1.93
VPS13D-207ENST00000476169 PRTN3P24158 256 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 CTRLP40313 264 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 SERPINB9P50453 376 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 ZNF136P52737 540 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 GFERP55789 205 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 TSPAN31Q12999 210 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 FAM53BQ14153 422 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 ZNF235Q14590 738 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 C16orf72Q14CZ0 275 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 SNCBQ16143 134 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 SMUG1Q53HV7 270 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 C9orf129Q5T035 196 aaKnown RBP2.97□□□□□ -1.93
VPS13D-207ENST00000476169 TNFAIP8L2Q6P589 184 aaPredicted RBP2.97□□□□□ -1.93
VPS13D-207ENST00000476169 ZNF530Q6P9A1 599 aaPredicted RBP2.97□□□□□ -1.93
VPS13D-207ENST00000476169 ZNF773Q6PK81 442 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 SPNS3Q6ZMD2 512 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 CCDC121Q6ZUS5 278 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 GALNT10Q86SR1 603 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 CALHM1Q8IU99 346 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 UBALD2Q8IYN6 164 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 STK40Q8N2I9 435 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 Q8N9W7 124 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 TWIST2Q8WVJ9 160 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 NEURL3Q96EH8 262 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 CEP170P1Q96L14 293 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 CEP19Q96LK0 163 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 OR2A7Q96R45 310 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 LINC01587Q99440 93 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 CDX2Q99626 313 aaPredicted RBP2.97□□□□□ -1.93
VPS13D-207ENST00000476169 TIPINQ9BVW5 301 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 SAMD10Q9BYL1 202 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 OR51B6Q9H340 312 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 PSG11Q9UQ72 335 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 THSD7AQ9UPZ6 1657 aa2.97□□□□□ -1.93
VPS13D-207ENST00000476169 TRAV8-3A0A0A6YYJ7 113 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 IGHV3-66A0A0C4DH42 116 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 FAM168BA1KXE4 195 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 PGPA6NDG6 321 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 FAM183AA6NL82 134 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 CHST10O43529 356 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 SS18L1O75177 396 aaPredicted RBP2.96□□□□□ -1.94
VPS13D-207ENST00000476169 PDCD6O75340 191 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 ARL6IP5O75915 188 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 HIST1H1EP10412 219 aaKnown RBP2.96□□□□□ -1.94
VPS13D-207ENST00000476169 G0S2P27469 103 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 AGTR1P30556 359 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 NUDT1P36639 197 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 CD79BP40259 229 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 PMELP40967 661 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 CAPZBP47756 277 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 SULT1A2P50226 295 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 IDH3GP51553 393 aaPredicted RBP2.96□□□□□ -1.94
VPS13D-207ENST00000476169 OR4D2P58180 307 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 PPP1CAP62136 330 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 CCL7P80098 99 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 IGLV3-21P80748 117 aaPredicted RBP2.96□□□□□ -1.94
VPS13D-207ENST00000476169 SRSF6Q13247 344 aaKnown RBP2.96□□□□□ -1.94
VPS13D-207ENST00000476169 C1DQ13901 141 aaKnown RBP2.96□□□□□ -1.94
VPS13D-207ENST00000476169 Q499Y3 187 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 FAM78AQ5JUQ0 283 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 SPIN3Q5JUX0 258 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 NXNL2Q5VZ03 156 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 IL34Q6ZMJ4 242 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 OLIG3Q7RTU3 272 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 SLC51BQ86UW2 128 aa2.96□□□□□ -1.94
VPS13D-207ENST00000476169 NT5DC3Q86UY8 548 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms