RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 PARP11Q9NR21 331 aa12.36□□□□□ -0.43
COL4A3-202ENST00000396578 OR2W5A6NFC9 320 aa12.36□□□□□ -0.43
COL4A3-202ENST00000396578 IZUMO4Q1ZYL8 232 aa12.36□□□□□ -0.43
COL4A3-202ENST00000396578 C16orf82Q7Z2V1 217 aa12.36□□□□□ -0.43
COL4A3-202ENST00000396578 LRRC75AQ8NAA5 344 aa12.36□□□□□ -0.43
COL4A3-202ENST00000396578 OR8B12Q8NGG6 310 aa12.36□□□□□ -0.43
COL4A3-202ENST00000396578 GAGE10A6NGK3 116 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 OR4A8P0C604 315 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 CDKN2AP42771 156 aaKnown RBP12.35□□□□□ -0.43
COL4A3-202ENST00000396578 KIR2DL1P43626 348 aaPredicted RBP12.35□□□□□ -0.43
COL4A3-202ENST00000396578 KIR2DL2P43627 348 aaPredicted RBP12.35□□□□□ -0.43
COL4A3-202ENST00000396578 MVDP53602 400 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 NKG7Q16617 165 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 NSUN5P2Q63ZY6 315 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 RAB33BQ9H082 229 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 IGHV3-13P01766 116 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 IGHV3-7P01780 117 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 VDAC1P21796 283 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 IL11RAQ14626 422 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 AKIRIN1Q9H9L7 192 aaPredicted RBP12.35□□□□□ -0.43
COL4A3-202ENST00000396578 LGALSLQ3ZCW2 172 aaPredicted RBP12.35□□□□□ -0.43
COL4A3-202ENST00000396578 WDFY1Q8IWB7 410 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 IGF2P01344 180 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 OR10D3Q8NH80 312 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 VSIG4Q9Y279 399 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 Q8WTZ3 238 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 ASB10Q8WXI3 467 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 PHF7Q9BWX1 381 aaPredicted RBP12.35□□□□□ -0.43
COL4A3-202ENST00000396578 TRAV38-1A0A0B4J264 116 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 RAB29O14966 203 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 GLULP15104 373 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 PAFAH1B2P68402 229 aa12.35□□□□□ -0.43
COL4A3-202ENST00000396578 SRFP11831 508 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 FAM109BQ6ICB4 259 aaPredicted RBP12.34□□□□□ -0.43
COL4A3-202ENST00000396578 LRRC61Q9BV99 259 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 LOC107984156A0A0G2JMH3 177 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 MEX3AA1L020 520 aaKnown RBP12.34□□□□□ -0.43
COL4A3-202ENST00000396578 LINC00862A6NCI5 91 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 ARL17AQ8IVW1 177 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 OR8I2Q8N0Y5 310 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 OR4X1Q8NH49 305 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 MPC1Q9Y5U8 109 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 PDCD11Q14690 1871 aaKnown RBP12.34□□□□□ -0.43
COL4A3-202ENST00000396578 A0A1B0GU03 582 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 PITX3O75364 302 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 OR11H7Q8NGC8 314 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 SMDT1Q9H4I9 107 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 A0A1W2PR80 420 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 PAGE4O60829 102 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 SPATA45Q537H7 98 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 SPANXN1Q5VSR9 72 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 TEPPQ6URK8 271 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 NTMQ9P121 344 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 LAMB2P55268 1798 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 TRAV17A0A0B4J275 112 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 Q6ZNB5 142 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 OPN4Q9UHM6 478 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 DOCK9Q9BZ29 2069 aa12.34□□□□□ -0.43
COL4A3-202ENST00000396578 ZNF646O15015 1829 aaPredicted RBP12.33□□□□□ -0.43
COL4A3-202ENST00000396578 H7C2G1 150 aa12.33□□□□□ -0.43
COL4A3-202ENST00000396578 J3KRW8 73 aa12.33□□□□□ -0.43
COL4A3-202ENST00000396578 CCL2P13500 99 aa12.33□□□□□ -0.43
COL4A3-202ENST00000396578 YBX1P67809 324 aaKnown RBP12.33□□□□□ -0.43
COL4A3-202ENST00000396578 C12orf54Q6X4T0 127 aa12.33□□□□□ -0.43
COL4A3-202ENST00000396578 ASCL5Q7RTU5 278 aa12.33□□□□□ -0.43
COL4A3-202ENST00000396578 FAM157AC9JC47 383 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 A0A1B0GTH9 108 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 ZNF345Q14585 488 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 PRNDQ9UKY0 176 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 DLEC1Q9Y238 1755 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 LYZL6O75951 148 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 FZD5Q13467 585 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 ERASQ7Z444 233 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 CARFQ8N187 725 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 GAPTQ8N292 157 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 PRR13Q9NZ81 148 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 CDC42EP3Q9UKI2 254 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 TBX21Q9UL17 535 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 SCN7AQ01118 1682 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 MRPS11P82912 194 aaKnown RBP12.33□□□□□ -0.44
COL4A3-202ENST00000396578 EWSR1Q01844 656 aaKnown RBP eCLIP12.33□□□□□ -0.44
COL4A3-202ENST00000396578 DNLZQ5SXM8 178 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 OR6X1Q8NH79 312 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 ZNF502Q8TBZ5 544 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 PPYP01298 95 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 KIR3DL2P43630 455 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 PRNTQ86SH4 94 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 COPS9Q8WXC6 57 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 CTXND1A0A1B0GTU2 59 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 BTF3P20290 206 aaKnown RBP12.33□□□□□ -0.44
COL4A3-202ENST00000396578 PGFP49763 221 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 OR2J1Q9GZK6 312 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 CES1P1Q9UKY3 287 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 V9GYH0 126 aa12.33□□□□□ -0.44
COL4A3-202ENST00000396578 NRXN3Q9Y4C0 1643 aa12.32□□□□□ -0.44
COL4A3-202ENST00000396578 CTLA4P16410 223 aa12.32□□□□□ -0.44
COL4A3-202ENST00000396578 COL19A1Q14993 1142 aa12.32□□□□□ -0.44
COL4A3-202ENST00000396578 RSPO2Q6UXX9 243 aaPredicted RBP12.32□□□□□ -0.44
COL4A3-202ENST00000396578 ZNF793Q6ZN11 406 aa12.32□□□□□ -0.44
COL4A3-202ENST00000396578 LINC00596Q86U02 117 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms