RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 RSG1Q9BU20 258 aa11.15□□□□□ -0.62
SFSWAP-209ENST00000540469 IFNL4K9M1U5 179 aa11.15□□□□□ -0.62
SFSWAP-209ENST00000540469 SEMA4FO95754 770 aa11.15□□□□□ -0.62
SFSWAP-209ENST00000540469 GCGP01275 180 aa11.15□□□□□ -0.62
SFSWAP-209ENST00000540469 CAPZBP47756 277 aa11.15□□□□□ -0.62
SFSWAP-209ENST00000540469 ELLP55199 621 aaPredicted RBP11.15□□□□□ -0.62
SFSWAP-209ENST00000540469 TESK1Q15569 626 aa11.15□□□□□ -0.62
SFSWAP-209ENST00000540469 ETFRF1Q6IPR1 90 aa11.15□□□□□ -0.62
SFSWAP-209ENST00000540469 PARM1Q6UWI2 310 aa11.15□□□□□ -0.62
SFSWAP-209ENST00000540469 LYZL4Q96KX0 146 aa11.15□□□□□ -0.62
SFSWAP-209ENST00000540469 FUT9Q9Y231 359 aa11.15□□□□□ -0.62
SFSWAP-209ENST00000540469 TNFRSF4P43489 277 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 TAS2R30P59541 319 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 MALLQ13021 153 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 C16orf82Q7Z2V1 217 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 TBC1D26Q86UD7 250 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 LRTM2Q8N967 370 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 BEND2Q8NDZ0 799 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 ATP5SQ99766 215 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 PLK3Q9H4B4 646 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 OBP2AQ9NY56 170 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 UNC13CQ8NB66 2214 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 M0R135 149 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 CA11O75493 328 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 PPYP01298 95 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 CD55P08174 381 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 FAM90A2PQ658T7 463 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 TIPARPQ7Z3E1 657 aaKnown RBP11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 ZNF799Q96GE5 643 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 SNHG12Q9BXW3 62 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 METTL7AQ9H8H3 244 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 SRD5A3Q9H8P0 318 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 TRBV24-1A0A075B6N3 115 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 FOXI3A8MTJ6 420 aaPredicted RBP11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 ZNF732B4DXR9 585 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 OR4A8P0C604 315 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 DTYMKP23919 212 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 GALR1P47211 349 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 GJC3Q8NFK1 279 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 ACTR3CQ9C0K3 210 aaPredicted RBP11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 SDF2L1Q9HCN8 221 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 ST3GAL6Q9Y274 331 aa11.14□□□□□ -0.63
SFSWAP-209ENST00000540469 NCOA6Q14686 2063 aaPredicted RBP11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 TCRBV21S2A2A0A5A6 115 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 MOB3AQ96BX8 217 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 MRPL13Q9BYD1 178 aaKnown RBP11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 B3GAT1Q9P2W7 334 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 CCL1P22362 96 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 CTHP32929 405 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 BLKP51451 505 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 RND2P52198 227 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 PCGF1Q9BSM1 259 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 CTDSP1Q9GZU7 261 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 TMEM222Q9H0R3 208 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 RPRMQ9NS64 109 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 GOLT1BQ9Y3E0 138 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 CST2P09228 141 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 RAB4AP20338 218 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 BAXQ07812 192 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 DMRTA1Q5VZB9 504 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 H1FOOQ8IZA3 346 aaPredicted RBP11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 OR6X1Q8NH79 312 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 LMX1AQ8TE12 382 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 ANGPTL4Q9BY76 406 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 TWSG1Q9GZX9 223 aa11.13□□□□□ -0.63
SFSWAP-209ENST00000540469 TMEM131Q92545 1883 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 NPIPB13A6NJU9 1138 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 NPIPB4C9JG80 1138 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 HMGB3O15347 200 aaKnown RBP11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 TK1P04183 234 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 MSR1P21757 451 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 TRA2AQ13595 282 aaKnown RBP eCLIP11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 CST9LP1Q5W188 147 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 C5orf24Q7Z6I8 188 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 FBRSQ9HAH7 460 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 DECR2Q9NUI1 292 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 PRSS50Q9UI38 385 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 V9GYS6 101 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 ASXL3Q9C0F0 2248 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 MARCH11A6NNE9 402 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 LCATP04180 440 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 EFNA3P52797 238 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 TMEM241Q24JQ0 296 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 BSXQ3C1V8 233 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 WDR5BQ86VZ2 330 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 OR10J5Q8NHC4 309 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 SPTSSAQ969W0 71 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 RCC1LQ96I51 464 aaKnown RBP11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 GABRG3Q99928 467 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 CISD1Q9NZ45 108 aaKnown RBP11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 HSPB6O14558 160 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 DLX2Q07687 328 aaPredicted RBP11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 IL24Q13007 206 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 CNN3Q15417 329 aaKnown RBP11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 FAM69BQ5VUD6 431 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 OSR2Q8N2R0 312 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 GPR137CQ8N3F9 429 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 RNASEH2CQ8TDP1 164 aaKnown RBP11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 LHX4Q969G2 390 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 PNRC2Q9NPJ4 139 aaKnown RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms