RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 POLR2J3Q9H1A7 115 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 OR52D1Q9H346 318 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 NELFAQ9H3P2 528 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 PIGMQ9H3S5 423 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 EXOSC3Q9NQT5 275 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 DCAF13Q9NV06 445 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 TVP23BQ9NYZ1 205 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 MRPS18CQ9Y3D5 142 aaKnown RBP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 AUP1Q9Y679 476 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 UNC119BA6NIH7 251 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 DEFB108AA8MXU0 73 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 RER1O15258 196 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 GASTP01350 101 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 BGLAPP02818 100 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 MT-ND4P03905 459 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 HOXB5P09067 269 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 PGA3P0DJD8 388 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF32P17041 273 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 HOXB9P17482 250 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 PCMT1P22061 227 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 MPGP29372 298 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 SORDQ00796 357 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 MOGAT2Q3SYC2 334 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 FBXL14Q8N1E6 418 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 OR52L1Q8NGH7 329 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 GPR148Q8TDV2 347 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 NOL4LQ96MY1 436 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 FEVQ99581 238 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 ARHGDIGQ99819 225 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 COMMD4Q9H0A8 199 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 RASL12Q9NYN1 266 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 COMMD9Q9P000 198 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 FOXD3Q9UJU5 478 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 FLVCR2Q9UPI3 526 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 TRAPPC4Q9Y296 219 aa6.8□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF469Q96JG9 3925 aaPredicted RBP6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 PGPEP1LA6NFU8 196 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 A8MWP6 167 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 DCTN6O00399 190 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 DHHO43323 396 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 ZNF208O43345 1280 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 PTHP01270 115 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 OR4A8P0C604 315 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 CD8BP10966 210 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 MDKP21741 143 aaPredicted RBP6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 IL2RGP31785 369 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 GABRA6Q16445 453 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 MICBQ29980 383 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 ADGRE4PQ86SQ3 457 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 CALHM3Q86XJ0 350 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 CPOQ8IVL8 374 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 SLC25A28Q96A46 364 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 SMIM12Q96EX1 92 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 NIPSNAP1Q9BPW8 284 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 PLA2G12AQ9BZM1 189 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 PARP12Q9H0J9 701 aaKnown RBP6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 RASD1Q9Y272 281 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 RHBDD3Q9Y3P4 386 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 DFFBO76075 338 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 HLA-DPB1P04440 258 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 ADRA2AP08913 450 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 CTLA4P16410 223 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 CRISP1P54107 249 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 COL5A1-AS1Q5SY13 56 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 OR10G2Q8NGC3 310 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 MRGPRDQ8TDS7 321 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 FAM222BQ8WU58 562 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 CCL17Q92583 94 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 ZMYND19Q96E35 227 aaPredicted RBP6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 AKR1E2Q96JD6 320 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 SULT4A1Q9BR01 284 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 OR6C3Q9NZP0 311 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 FTCDNL1E5RQL4 147 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 ABHD16AO95870 558 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 NGFP01138 241 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 HIST1H1CP16403 213 aaKnown RBP6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 ISL1P61371 349 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 P2RY6Q15077 328 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 DHRS7BQ6IAN0 325 aaPredicted RBP6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 OR8G2PQ6IF36 304 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 PAQR4Q8N4S7 273 aaPredicted RBP6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 THEM6Q8WUY1 208 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 SLC25A44Q96H78 314 aaPredicted RBP6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 INTS14Q96SY0 518 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 CNN2Q99439 309 aaKnown RBP6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 MAN2C1Q9NTJ4 1040 aa6.79□□□□□ -1.32
LIMCH1-219ENST00000514096 HCFC1P51610 2035 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 PSMB1P20618 241 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 IFNGR2P38484 337 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 ETV6P41212 452 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 KLF3P57682 345 aaPredicted RBP6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 SEC61A1P61619 476 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 RHEBQ15382 184 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 OR52M1Q8NGK5 317 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 OR1J1Q8NGS3 322 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 OR13D1Q8NGV5 346 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 SRSF8Q9BRL6 282 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 EIF5A2Q9GZV4 153 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 GTSF1LQ9H1H1 148 aa6.78□□□□□ -1.32
LIMCH1-219ENST00000514096 CA10Q9NS85 328 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms