RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 OXLD1Q5BKU9 147 aa13.24□□□□□ -0.29
CCDC28B-204ENST00000469003 LPCAT4Q643R3 524 aa13.24□□□□□ -0.29
CCDC28B-204ENST00000469003 ZNF529Q6P280 563 aa13.24□□□□□ -0.29
CCDC28B-204ENST00000469003 RBM14Q96PK6 669 aaKnown RBP13.24□□□□□ -0.29
CCDC28B-204ENST00000469003 NCOR1P1Q9H4R4 102 aa13.24□□□□□ -0.29
CCDC28B-204ENST00000469003 FAM118AQ9NWS6 357 aa13.24□□□□□ -0.29
CCDC28B-204ENST00000469003 GABRPO00591 440 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 MAGEB3O15480 346 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 PRB2P02812 416 aaPredicted RBP13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 CGB3P0DN86 165 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 CGB7P0DN87 165 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 GLP1RP43220 463 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 IL13RA2Q14627 380 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 ZSCAN26Q16670 478 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 ABCA11PQ4W5N1 156 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 PAN3Q58A45 887 aaKnown RBP13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 CCDC144NLQ6NUI1 221 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 CENPVQ7Z7K6 275 aaPredicted RBP13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 ZNF565Q8N9K5 539 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 OR9G1Q8NH87 305 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 CNIH3Q8TBE1 160 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 TNFAIP8L1Q8WVP5 186 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 APH1BQ8WW43 257 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 KIRREL1Q96J84 757 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 NR1H4Q96RI1 486 aaPredicted RBP13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 GPER1Q99527 375 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 JAM3Q9BX67 310 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 S100A14Q9HCY8 104 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 KIF25Q9UIL4 384 aa13.23□□□□□ -0.29
CCDC28B-204ENST00000469003 TRAV24A0A0B4J272 114 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 HSPB6O14558 160 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 LIMS3P0CW19 117 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 LIMS4P0CW20 117 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 NFYBP25208 207 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 MNDAP41218 407 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 OR3A4PP47883 348 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 GTF2A1P52655 376 aaPredicted RBP13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 RBM39Q14498 530 aaKnown RBP13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 UTF1Q5T230 341 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 SATL1Q86VE3 508 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 PQLC1Q8N2U9 271 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 Q8NFD4 153 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 OR51A2Q8NGJ7 313 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 OR13A1Q8NGR1 328 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 RGP1Q92546 391 aaPredicted RBP13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 BARHL1Q9BZE3 327 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 LINC00574Q9H8X3 128 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 FGF20Q9NP95 211 aaPredicted RBP13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 PCDHB16Q9NRJ7 776 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 CALYQ9NYX4 217 aa13.22□□□□□ -0.29
CCDC28B-204ENST00000469003 MEIKINA0A087WXM9 373 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 A0A1W2PRX2 142 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 AMY1AP04745 511 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 AMY2AP04746 511 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 LPLP06858 475 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 C21orf33P30042 268 aaPredicted RBP13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 SOX2P48431 317 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 KCNJ3P48549 501 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 PAX5Q02548 391 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 RSU1Q15404 277 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 CCDC58Q4VC31 144 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 TCTEX1D4Q5JR98 221 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 RPL22L1Q6P5R6 122 aaKnown RBP13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 ASCL4Q6XD76 172 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 Q6ZPA2 131 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 GPR148Q8TDV2 347 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 FAM192AQ9GZU8 254 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 NECAP2Q9NVZ3 263 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 TAS2R4Q9NYW5 299 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 IDI2-AS1Q9NZ38 188 aa13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 AMMECR1Q9Y4X0 333 aaPredicted RBP13.21□□□□□ -0.29
CCDC28B-204ENST00000469003 J3QR06 171 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 M0QZK8 103 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 WBP4O75554 376 aaKnown RBP13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 IL1AP01583 271 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 CD2P06729 351 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 FAM106CPP0CH98 169 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 PIGYQ3MUY2 71 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 RSBN1Q5VWQ0 802 aaPredicted RBP13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 THNSL2Q86YJ6 484 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 WFDC9Q8NEX5 89 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 OR4X2Q8NGF9 303 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 OR10K1Q8NGX5 313 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 PLPPR1Q8TBJ4 325 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 SGCDQ92629 289 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 TOMM40LQ969M1 308 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 RPEQ96AT9 228 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 PHF21AQ96BD5 680 aa13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 TSSC4Q9Y5U2 329 aaPredicted RBP13.2□□□□□ -0.3
CCDC28B-204ENST00000469003 NOTCH3Q9UM47 2321 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 TCRBV4S1A1TA0A5B7 111 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 FAM90A18PA6NE21 464 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 FAM90A16PA6NEW6 464 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 FAM90A20PA6NIJ5 464 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 SH2D7A6NKC9 451 aaPredicted RBP13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 FAM90A9PA6NNJ1 464 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 FAM90A12PA8MX19 464 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 FAM90A5PA8MXJ8 464 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 NPIPB11E5RHQ5 1161 aa13.19□□□□□ -0.3
CCDC28B-204ENST00000469003 PIN1P1O15428 100 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms