RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 TRIM22Q8IYM9 498 aa5.69□□□□□ -1.5
VPS13D-214ENST00000620676 SRGAP2O75044 1071 aa5.69□□□□□ -1.5
VPS13D-214ENST00000620676 LGR5O75473 907 aa5.69□□□□□ -1.5
VPS13D-214ENST00000620676 RNF10Q8N5U6 811 aaKnown RBP5.69□□□□□ -1.5
VPS13D-214ENST00000620676 UBA5Q9GZZ9 404 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 MAPKBP1O60336 1514 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 GUCY2CP25092 1073 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 HIP1O00291 1037 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 ZFYP08048 801 aaPredicted RBP5.68□□□□□ -1.5
VPS13D-214ENST00000620676 HAUS2Q9NVX0 235 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 SBNO2Q9Y2G9 1366 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.68□□□□□ -1.5
VPS13D-214ENST00000620676 FAM71BQ8TC56 605 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 RHBDL2Q9NX52 303 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 DYTNA2CJ06 578 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 CDC25CP30307 473 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 GGCXP38435 758 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 USP5P45974 858 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 MICU3Q86XE3 530 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 MRPL50Q8N5N7 158 aaKnown RBP5.68□□□□□ -1.5
VPS13D-214ENST00000620676 CABP1Q9NZU7 370 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 TRIM35Q9UPQ4 493 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 SPTLC2O15270 562 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 IFNAR2P48551 515 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 SAAL1Q96ER3 474 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 EFCAB8A8MWE9 144 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 CFAP157Q5JU67 520 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 TRIM6Q9C030 488 aaPredicted RBP5.68□□□□□ -1.5
VPS13D-214ENST00000620676 SWAP70Q9UH65 585 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 PIP4K2AP48426 406 aaPredicted RBP5.68□□□□□ -1.5
VPS13D-214ENST00000620676 LRRN4CLQ8ND94 238 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 KIF1CO43896 1103 aaKnown RBP5.68□□□□□ -1.5
VPS13D-214ENST00000620676 C1orf141Q5JVX7 400 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 CCDC158Q5M9N0 1113 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 CAPRIN2Q6IMN6 1127 aaKnown RBP5.68□□□□□ -1.5
VPS13D-214ENST00000620676 RXRAP19793 462 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 PPP1R42Q7Z4L9 355 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 PACS2Q86VP3 889 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 AP1G2O75843 785 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 ANKRD7Q92527 254 aa5.68□□□□□ -1.5
VPS13D-214ENST00000620676 RPGRIP1LQ68CZ1 1315 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 TRIM21P19474 475 aaKnown RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 MYO1EQ12965 1108 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 PDCLQ13371 301 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 NFE2L2Q16236 605 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 FAM114A1Q8IWE2 563 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 EEF2KMTQ96G04 330 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 NAA15Q9BXJ9 866 aaKnown RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 SLC26A6Q9BXS9 759 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 TMEM165Q9HC07 324 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 NBPF7P0C2Y1 421 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 KRT13P13646 458 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 CXCR5P32302 372 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 SATB1Q01826 763 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 GKAP1Q5VSY0 366 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 TBC1D1Q86TI0 1168 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 CCDC43Q96MW1 224 aaKnown RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 POLKQ9UBT6 870 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 GGT7Q9UJ14 662 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 SETDB1Q15047 1291 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 ZKSCAN8Q15776 578 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 ZNF827Q17R98 1081 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 NCAPH2Q6IBW4 605 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 TCHPQ9BT92 498 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 HNRNPH1P31943 449 aaKnown RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 GJC1P36383 396 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 ADAT2Q7Z6V5 191 aaKnown RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 ANKRD42Q8N9B4 389 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 NSRP1Q9H0G5 558 aaKnown RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 CWC25Q9NXE8 425 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 SOWAHDA6NJG2 315 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 MIA2Q96PC5 1412 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 XBP1P17861 261 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 RASIP1Q5U651 963 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 PARP9Q8IXQ6 854 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 ANXA1P04083 346 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 TAF7Q15545 349 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 PROCA1Q8NCQ7 364 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 TRIM47Q96LD4 638 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 VAV2P52735 878 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 TAF11Q15544 211 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 RPAP2Q8IXW5 612 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 CREB3O43889 395 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 TSNAXIP1Q2TAA8 658 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 INTS8Q75QN2 995 aaKnown RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 TAB2Q9NYJ8 693 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 SLC8A1P32418 973 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 UAP1Q16222 522 aaPredicted RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 HOOK3Q86VS8 718 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 SNRNP27Q8WVK2 155 aaKnown RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 SBNO1A3KN83 1393 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 IDH1O75874 414 aaKnown RBP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 BRD1O95696 1058 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 EXOC4Q96A65 974 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 IL17RAQ96F46 866 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 TCEAL9Q9UHQ7 104 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 NPM1P06748 294 aaKnown RBP eCLIP5.67□□□□□ -1.5
VPS13D-214ENST00000620676 C2orf54Q08AI8 447 aa5.67□□□□□ -1.5
VPS13D-214ENST00000620676 STAMQ92783 540 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms