RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 DUOX2Q9NRD8 1548 aa10.21□□□□□ -0.78
VPS13D-212ENST00000543766 POLR3GO15318 223 aaPredicted RBP10.2□□□□□ -0.78
VPS13D-212ENST00000543766 PPP4CP60510 307 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 PSME1Q06323 249 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 DHX8Q14562 1220 aaKnown RBP10.2□□□□□ -0.78
VPS13D-212ENST00000543766 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.2□□□□□ -0.78
VPS13D-212ENST00000543766 SAMD3Q8N6K7 520 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 C3orf20Q8ND61 904 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.2□□□□□ -0.78
VPS13D-212ENST00000543766 BHMTQ93088 406 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 HDAC6Q9UBN7 1215 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 USP8P40818 1118 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 PPP4R4Q6NUP7 873 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 RNF168Q8IYW5 571 aaPredicted RBP10.2□□□□□ -0.78
VPS13D-212ENST00000543766 CEP295NLQ96MC4 621 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 TNMDQ9H2S6 317 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.2□□□□□ -0.78
VPS13D-212ENST00000543766 LRRFIP2Q9Y608 721 aaKnown RBP10.2□□□□□ -0.78
VPS13D-212ENST00000543766 DEPDC5O75140 1603 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 PRSS47A8MTI9 375 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 IMPDH2P12268 514 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 CCNHP51946 323 aaPredicted RBP10.2□□□□□ -0.78
VPS13D-212ENST00000543766 PACS2Q86VP3 889 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 GINM1Q9NU53 330 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 COMMD8Q9NX08 183 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 LCMT1Q9UIC8 334 aa10.2□□□□□ -0.78
VPS13D-212ENST00000543766 NKTRP30414 1462 aaKnown RBP10.19□□□□□ -0.78
VPS13D-212ENST00000543766 CAVIN2O95810 425 aa10.19□□□□□ -0.78
VPS13D-212ENST00000543766 LDHAP00338 332 aaKnown RBP10.19□□□□□ -0.78
VPS13D-212ENST00000543766 VDRP11473 427 aa10.19□□□□□ -0.78
VPS13D-212ENST00000543766 PTK7Q13308 1070 aa10.19□□□□□ -0.78
VPS13D-212ENST00000543766 ATP11CQ8NB49 1132 aa10.19□□□□□ -0.78
VPS13D-212ENST00000543766 IPCEF1Q8WWN9 437 aaPredicted RBP10.19□□□□□ -0.78
VPS13D-212ENST00000543766 ERBINQ96RT1 1412 aa10.19□□□□□ -0.78
VPS13D-212ENST00000543766 SMTNL1A8MU46 457 aa10.19□□□□□ -0.78
VPS13D-212ENST00000543766 SKIDA1Q1XH10 827 aa10.19□□□□□ -0.78
VPS13D-212ENST00000543766 MICALCLQ6ZW33 695 aa10.19□□□□□ -0.78
VPS13D-212ENST00000543766 SRLQ86TD4 932 aa10.19□□□□□ -0.78
VPS13D-212ENST00000543766 GIPC2Q8TF65 315 aa10.19□□□□□ -0.78
VPS13D-212ENST00000543766 PLCH2O75038 1416 aa10.19□□□□□ -0.78
VPS13D-212ENST00000543766 EME2A4GXA9 379 aaPredicted RBP10.19□□□□□ -0.78
VPS13D-212ENST00000543766 H0Y3Z8 333 aa10.19□□□□□ -0.78
VPS13D-212ENST00000543766 HALP42357 657 aa10.19□□□□□ -0.78
VPS13D-212ENST00000543766 CLIP3Q96DZ5 547 aa10.19□□□□□ -0.78
VPS13D-212ENST00000543766 ANKRD33BA6NCL7 494 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 RLBP1P12271 317 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 SCNN1BP51168 640 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 SLFN5Q08AF3 891 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 KLHL10Q6JEL2 608 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 TEX11Q8IYF3 940 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 EIF3FO00303 357 aaPredicted RBP10.18□□□□□ -0.78
VPS13D-212ENST00000543766 SMC1AQ14683 1233 aaKnown RBP10.18□□□□□ -0.78
VPS13D-212ENST00000543766 ZRSR1Q15695 479 aaKnown RBP10.18□□□□□ -0.78
VPS13D-212ENST00000543766 KLHL40Q2TBA0 621 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 UBXN4Q92575 508 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 IWS1Q96ST2 819 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 BAG1Q99933 345 aaPredicted RBP10.18□□□□□ -0.78
VPS13D-212ENST00000543766 OSBPL10Q9BXB5 764 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 HELLSQ9NRZ9 838 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 KIAA1468Q9P260 1216 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 SLC45A1Q9Y2W3 748 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 ATP10AO60312 1499 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 SKAP2O75563 359 aaPredicted RBP10.18□□□□□ -0.78
VPS13D-212ENST00000543766 MYCP01106 439 aaPredicted RBP10.18□□□□□ -0.78
VPS13D-212ENST00000543766 LAMB3Q13751 1172 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 NAA25Q14CX7 972 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 TTC39AQ5SRH9 613 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 SDCCAG8Q86SQ7 713 aaPredicted RBP10.18□□□□□ -0.78
VPS13D-212ENST00000543766 EFCAB13Q8IY85 973 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 B4GALNT2Q8NHY0 566 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 CTCFLQ8NI51 663 aaPredicted RBP10.18□□□□□ -0.78
VPS13D-212ENST00000543766 PRIMPOLQ96LW4 560 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 JPH2Q9BR39 696 aaPredicted RBP10.18□□□□□ -0.78
VPS13D-212ENST00000543766 IER2Q9BTL4 223 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 XPO4Q9C0E2 1151 aaKnown RBP10.18□□□□□ -0.78
VPS13D-212ENST00000543766 BRD8Q9H0E9 1235 aa10.18□□□□□ -0.78
VPS13D-212ENST00000543766 ARIH1Q9Y4X5 557 aaPredicted RBP10.18□□□□□ -0.78
VPS13D-212ENST00000543766 S100BP04271 92 aaPredicted RBP10.17□□□□□ -0.78
VPS13D-212ENST00000543766 MCM2P49736 904 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 TBC1D8BQ0IIM8 1120 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 BNIP1Q12981 228 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 MMS22LQ6ZRQ5 1243 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 MYOCDQ8IZQ8 938 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 GBP7Q8N8V2 638 aaPredicted RBP10.17□□□□□ -0.78
VPS13D-212ENST00000543766 TSGA10Q9BZW7 698 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 AKAP2Q9Y2D5 859 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 INO80Q9ULG1 1556 aaPredicted RBP10.17□□□□□ -0.78
VPS13D-212ENST00000543766 BICDL2A1A5D9 508 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 SPTLC2O15270 562 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 NDUFB5O43674 189 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 E2F6O75461 281 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 ZNF449Q6P9G9 518 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 TXLNBQ8N3L3 684 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 DYDC1Q8WWB3 177 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 MSL1Q68DK7 614 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 DRAXINQ8NBI3 349 aaPredicted RBP10.17□□□□□ -0.78
VPS13D-212ENST00000543766 ZMAT2Q96NC0 199 aaKnown RBP10.17□□□□□ -0.78
VPS13D-212ENST00000543766 NLRP2Q9NX02 1062 aa10.17□□□□□ -0.78
VPS13D-212ENST00000543766 CGNL1Q0VF96 1302 aa10.16□□□□□ -0.78
VPS13D-212ENST00000543766 EIF2AK4Q9P2K8 1649 aaKnown RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms