RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SEC62Q99442 399 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-209ENST00000509277 BSDC1Q9NW68 430 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-209ENST00000509277 RBM27Q9P2N5 1060 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-209ENST00000509277 ZNF804BA4D1E1 1349 aa10.34□□□□□ -0.75
LIMCH1-209ENST00000509277 COL5A3P25940 1745 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-209ENST00000509277 MASTLQ96GX5 879 aa10.34□□□□□ -0.75
LIMCH1-209ENST00000509277 FAM227BQ96M60 508 aa10.34□□□□□ -0.75
LIMCH1-209ENST00000509277 MTFR1LQ9H019 292 aa10.34□□□□□ -0.75
LIMCH1-209ENST00000509277 PAG1Q9NWQ8 432 aa10.34□□□□□ -0.75
LIMCH1-209ENST00000509277 NPR1P16066 1061 aa10.34□□□□□ -0.75
LIMCH1-209ENST00000509277 BMP2KLQ5H9B9 411 aa10.34□□□□□ -0.75
LIMCH1-209ENST00000509277 PPP4R3BQ5MIZ7 849 aa10.34□□□□□ -0.75
LIMCH1-209ENST00000509277 SLC10A5Q5PT55 438 aa10.34□□□□□ -0.75
LIMCH1-209ENST00000509277 MIGA1Q8NAN2 632 aa10.34□□□□□ -0.75
LIMCH1-209ENST00000509277 GNL3LQ9NVN8 582 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-209ENST00000509277 NUP188Q5SRE5 1749 aa10.34□□□□□ -0.75
LIMCH1-209ENST00000509277 CIAO1O76071 339 aa10.33□□□□□ -0.76
LIMCH1-209ENST00000509277 ALDH1B1P30837 517 aa10.33□□□□□ -0.76
LIMCH1-209ENST00000509277 HIBADHP31937 336 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-209ENST00000509277 PI4K2BQ8TCG2 481 aa10.33□□□□□ -0.76
LIMCH1-209ENST00000509277 SPON1Q9HCB6 807 aa10.33□□□□□ -0.76
LIMCH1-209ENST00000509277 UBR3Q6ZT12 1888 aa10.33□□□□□ -0.76
LIMCH1-209ENST00000509277 MCAMP43121 646 aa10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 NLGN2Q8NFZ4 835 aa10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 PRPF40AO75400 957 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 RBM5P52756 815 aaKnown RBP eCLIP10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 RASGRF1Q13972 1273 aa10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 SLC9C2Q5TAH2 1124 aa10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 TTLL6Q8N841 843 aa10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 CHMP4CQ96CF2 233 aa10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 MXD3Q9BW11 206 aa10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 ANKRD2Q9GZV1 360 aa10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 ZNF277Q9NRM2 450 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 GTF2IP78347 998 aa10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 NMIQ13287 307 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 TOMM22Q9NS69 142 aa10.32□□□□□ -0.76
LIMCH1-209ENST00000509277 CCDC173Q0VFZ6 552 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 AOC3Q16853 763 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 PPIP5K2O43314 1243 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 BBOX1O75936 387 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 MAGEB6Q8N7X4 407 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 SPATA5Q8NB90 893 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 CNKSR1Q969H4 720 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 ZFP91Q96JP5 570 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 POLLQ9UGP5 575 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 XDHP47989 1333 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 C4AP0C0L4 1744 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 TNS1Q9HBL0 1735 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 FSD2A1L4K1 749 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 ARHGAP27Q6ZUM4 889 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 SLC16A10Q8TF71 515 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 EVI5LQ96CN4 794 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 HMG20BQ9P0W2 317 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 TTC41PQ6P2S7 1318 aa10.31□□□□□ -0.76
LIMCH1-209ENST00000509277 OFD1O75665 1012 aa10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 DZIP1Q86YF9 867 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 LARGE2Q8N3Y3 721 aa10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 FHDC1Q9C0D6 1143 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 A0A0D9SFI3 127 aa10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 ATP5JP18859 108 aa10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 CHMLP26374 656 aa10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 HAND2P61296 217 aa10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 FAM84BQ96KN1 310 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 LARP6Q9BRS8 491 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 PIM2Q9P1W9 311 aa10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 CICQ96RK0 1608 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 SYCE3A1L190 88 aa10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 RAD17O75943 681 aa10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 SCNN1DP51172 638 aa10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 TBC1D16Q8TBP0 767 aa10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 IL25Q9H293 177 aa10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 PIH1D3Q9NQM4 214 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-209ENST00000509277 KIAA2012Q0VF49 1180 aa10.29□□□□□ -0.76
LIMCH1-209ENST00000509277 RIC1Q4ADV7 1423 aa10.29□□□□□ -0.76
LIMCH1-209ENST00000509277 DALRD3Q5D0E6 543 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-209ENST00000509277 RBM26Q5T8P6 1007 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-209ENST00000509277 ZNF804AQ7Z570 1209 aa10.29□□□□□ -0.76
LIMCH1-209ENST00000509277 SPEF2Q9C093 1822 aa10.29□□□□□ -0.76
LIMCH1-209ENST00000509277 KCNQ5Q9NR82 932 aa10.29□□□□□ -0.76
LIMCH1-209ENST00000509277 DTNBO60941 627 aa10.29□□□□□ -0.76
LIMCH1-209ENST00000509277 CYP2E1P05181 493 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-209ENST00000509277 CYP7A1P22680 504 aa10.29□□□□□ -0.76
LIMCH1-209ENST00000509277 UBE4AQ14139 1066 aa10.29□□□□□ -0.76
LIMCH1-209ENST00000509277 TBC1D32Q96NH3 1257 aa10.29□□□□□ -0.76
LIMCH1-209ENST00000509277 MAP7D2Q96T17 732 aa10.29□□□□□ -0.76
LIMCH1-209ENST00000509277 UQCRFS1P1P0C7P4 283 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 PRDX5P30044 214 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 TNNT3P45378 269 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 KIAA0825Q8IV33 1275 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 VGLL2Q8N8G2 317 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 RUFY2Q8WXA3 655 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 ZNF592Q92610 1267 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 STAP2Q9UGK3 403 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 ATP6V0A2Q9Y487 856 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 GJA3Q9Y6H8 435 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 ANKRD36CQ5JPF3 1778 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 MAP3K12Q12852 859 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 DIXDC1Q155Q3 683 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 CRAMP1Q96RY5 1269 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms