RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 ZNF541Q9H0D2 1346 aa17.81■□□□□ 0.44
BRCA1-223ENST00000494123 PSME4Q14997 1843 aa17.81■□□□□ 0.44
BRCA1-223ENST00000494123 ARID4AP29374 1257 aaPredicted RBP17.8■□□□□ 0.44
BRCA1-223ENST00000494123 JAG2Q9Y219 1238 aa17.8■□□□□ 0.44
BRCA1-223ENST00000494123 PSMD14O00487 310 aa17.8■□□□□ 0.44
BRCA1-223ENST00000494123 RASGRF1Q13972 1273 aa17.8■□□□□ 0.44
BRCA1-223ENST00000494123 STRIP1Q5VSL9 837 aa17.8■□□□□ 0.44
BRCA1-223ENST00000494123 ECHDC1Q9NTX5 307 aa17.8■□□□□ 0.44
BRCA1-223ENST00000494123 MX1P20591 662 aa17.79■□□□□ 0.44
BRCA1-223ENST00000494123 GPC2Q8N158 579 aa17.79■□□□□ 0.44
BRCA1-223ENST00000494123 OTUD7AQ8TE49 926 aaPredicted RBP17.79■□□□□ 0.44
BRCA1-223ENST00000494123 ZNF512BQ96KM6 892 aaPredicted RBP17.79■□□□□ 0.44
BRCA1-223ENST00000494123 FAM205AQ6ZU69 1335 aa17.78■□□□□ 0.44
BRCA1-223ENST00000494123 SPATA5Q8NB90 893 aa17.78■□□□□ 0.44
BRCA1-223ENST00000494123 TTC41PQ6P2S7 1318 aa17.77■□□□□ 0.44
BRCA1-223ENST00000494123 MCAMP43121 646 aa17.77■□□□□ 0.44
BRCA1-223ENST00000494123 WDR66Q8TBY9 1149 aa17.77■□□□□ 0.44
BRCA1-223ENST00000494123 TBC1D22AQ8WUA7 517 aa17.77■□□□□ 0.44
BRCA1-223ENST00000494123 HMG20BQ9P0W2 317 aa17.77■□□□□ 0.44
BRCA1-223ENST00000494123 COL1A1P02452 1464 aaPredicted RBP17.77■□□□□ 0.44
BRCA1-223ENST00000494123 PDS5AQ29RF7 1337 aaKnown RBP17.77■□□□□ 0.43
BRCA1-223ENST00000494123 MYO3BQ8WXR4 1341 aa17.77■□□□□ 0.43
BRCA1-223ENST00000494123 ERC2O15083 957 aa17.76■□□□□ 0.43
BRCA1-223ENST00000494123 ZBTB22O15209 634 aa17.76■□□□□ 0.43
BRCA1-223ENST00000494123 DDNO94850 711 aaPredicted RBP17.76■□□□□ 0.43
BRCA1-223ENST00000494123 VIL1P09327 827 aaKnown RBP17.76■□□□□ 0.43
BRCA1-223ENST00000494123 ATP5JP18859 108 aa17.76■□□□□ 0.43
BRCA1-223ENST00000494123 SCARF1Q14162 830 aa17.76■□□□□ 0.43
BRCA1-223ENST00000494123 MFSD14BQ5SR56 506 aa17.76■□□□□ 0.43
BRCA1-223ENST00000494123 DACT2Q5SW24 774 aa17.76■□□□□ 0.43
BRCA1-223ENST00000494123 RSBN1LQ6PCB5 846 aaPredicted RBP17.76■□□□□ 0.43
BRCA1-223ENST00000494123 SNRKQ9NRH2 765 aa17.76■□□□□ 0.43
BRCA1-223ENST00000494123 ZNF646O15015 1829 aaPredicted RBP17.76■□□□□ 0.43
BRCA1-223ENST00000494123 GLTPD2A6NH11 291 aa17.76■□□□□ 0.43
BRCA1-223ENST00000494123 TSHZ3Q63HK5 1081 aa17.76■□□□□ 0.43
BRCA1-223ENST00000494123 PI16Q6UXB8 463 aa17.76■□□□□ 0.43
BRCA1-223ENST00000494123 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.76■□□□□ 0.43
BRCA1-223ENST00000494123 MXD3Q9BW11 206 aa17.76■□□□□ 0.43
BRCA1-223ENST00000494123 AKAP11Q9UKA4 1901 aa17.75■□□□□ 0.43
BRCA1-223ENST00000494123 ZGPATQ8N5A5 531 aaKnown RBP17.75■□□□□ 0.43
BRCA1-223ENST00000494123 DNAJC2Q99543 621 aaKnown RBP17.75■□□□□ 0.43
BRCA1-223ENST00000494123 BOLA2Q9H3K6 86 aa17.75■□□□□ 0.43
BRCA1-223ENST00000494123 ZBTB12Q9Y330 459 aaPredicted RBP17.75■□□□□ 0.43
BRCA1-223ENST00000494123 GTF3C3Q9Y5Q9 886 aa17.75■□□□□ 0.43
BRCA1-223ENST00000494123 SALL3Q9BXA9 1300 aa17.74■□□□□ 0.43
BRCA1-223ENST00000494123 RPS12P25398 132 aaKnown RBP17.74■□□□□ 0.43
BRCA1-223ENST00000494123 ZAP70P43403 619 aa17.74■□□□□ 0.43
BRCA1-223ENST00000494123 PDE1AP54750 535 aa17.74■□□□□ 0.43
BRCA1-223ENST00000494123 FKBP1AP62942 108 aaKnown RBP17.74■□□□□ 0.43
BRCA1-223ENST00000494123 AGBL3Q8NEM8 1001 aa17.74■□□□□ 0.43
BRCA1-223ENST00000494123 ABCF2Q9UG63 623 aa17.74■□□□□ 0.43
BRCA1-223ENST00000494123 GLRX3O76003 335 aaKnown RBP17.73■□□□□ 0.43
BRCA1-223ENST00000494123 GMPSP49915 693 aaPredicted RBP17.73■□□□□ 0.43
BRCA1-223ENST00000494123 STAP2Q9UGK3 403 aa17.73■□□□□ 0.43
BRCA1-223ENST00000494123 SALL1Q9NSC2 1324 aa17.73■□□□□ 0.43
BRCA1-223ENST00000494123 PDE4AP27815 886 aa17.72■□□□□ 0.43
BRCA1-223ENST00000494123 LMOD1P29536 600 aaPredicted RBP17.72■□□□□ 0.43
BRCA1-223ENST00000494123 KIAA0825Q8IV33 1275 aa17.72■□□□□ 0.43
BRCA1-223ENST00000494123 PLEKHM2Q8IWE5 1019 aa17.72■□□□□ 0.43
BRCA1-223ENST00000494123 CERS5Q8N5B7 392 aa17.72■□□□□ 0.43
BRCA1-223ENST00000494123 NDUFB9Q9Y6M9 179 aa17.72■□□□□ 0.43
BRCA1-223ENST00000494123 F8W031 263 aaPredicted RBP17.72■□□□□ 0.43
BRCA1-223ENST00000494123 TTF1Q15361 905 aaPredicted RBP17.72■□□□□ 0.43
BRCA1-223ENST00000494123 SPTY2D1Q68D10 685 aaPredicted RBP17.72■□□□□ 0.43
BRCA1-223ENST00000494123 OGFOD1Q8N543 542 aa17.72■□□□□ 0.43
BRCA1-223ENST00000494123 PI4K2BQ8TCG2 481 aa17.72■□□□□ 0.43
BRCA1-223ENST00000494123 ZNF526Q8TF50 670 aaPredicted RBP17.72■□□□□ 0.43
BRCA1-223ENST00000494123 DPF2Q92785 391 aa17.72■□□□□ 0.43
BRCA1-223ENST00000494123 HAUS7Q99871 368 aa17.72■□□□□ 0.43
BRCA1-223ENST00000494123 AOX1Q06278 1338 aa17.71■□□□□ 0.43
BRCA1-223ENST00000494123 GOLIM4O00461 696 aa17.71■□□□□ 0.43
BRCA1-223ENST00000494123 CYP2E1P05181 493 aaPredicted RBP17.71■□□□□ 0.43
BRCA1-223ENST00000494123 LDHBP07195 334 aaKnown RBP17.71■□□□□ 0.43
BRCA1-223ENST00000494123 YY1P25490 414 aa17.71■□□□□ 0.43
BRCA1-223ENST00000494123 TBC1D9Q6ZT07 1266 aa17.71■□□□□ 0.43
BRCA1-223ENST00000494123 PAG1Q9NWQ8 432 aa17.71■□□□□ 0.43
BRCA1-223ENST00000494123 LRP2BPQ9P2M1 347 aa17.71■□□□□ 0.43
BRCA1-223ENST00000494123 HDAC9Q9UKV0 1011 aa17.71■□□□□ 0.43
BRCA1-223ENST00000494123 SUGT1Q9Y2Z0 365 aa17.71■□□□□ 0.43
BRCA1-223ENST00000494123 USP17L8P0C7I0 530 aa17.7■□□□□ 0.42
BRCA1-223ENST00000494123 ERICH6Q7L0X2 663 aa17.7■□□□□ 0.42
BRCA1-223ENST00000494123 L3MBTL3Q96JM7 780 aaPredicted RBP17.7■□□□□ 0.42
BRCA1-223ENST00000494123 OSBPL3Q9H4L5 887 aa17.7■□□□□ 0.42
BRCA1-223ENST00000494123 CNOT7Q9UIV1 285 aaKnown RBP17.7■□□□□ 0.42
BRCA1-223ENST00000494123 TTF2Q9UNY4 1162 aaKnown RBP17.7■□□□□ 0.42
BRCA1-223ENST00000494123 WDR90Q96KV7 1748 aa17.7■□□□□ 0.42
BRCA1-223ENST00000494123 MAST3O60307 1309 aa17.7■□□□□ 0.42
BRCA1-223ENST00000494123 H7C1D1 291 aa17.69■□□□□ 0.42
BRCA1-223ENST00000494123 PRDX5P30044 214 aa17.69■□□□□ 0.42
BRCA1-223ENST00000494123 SCNN1DP51172 638 aa17.69■□□□□ 0.42
BRCA1-223ENST00000494123 DZIP1Q86YF9 867 aaKnown RBP17.69■□□□□ 0.42
BRCA1-223ENST00000494123 MICALL2Q8IY33 904 aa17.69■□□□□ 0.42
BRCA1-223ENST00000494123 GMLQ99445 158 aa17.69■□□□□ 0.42
BRCA1-223ENST00000494123 GPRC5DQ9NZD1 345 aa17.69■□□□□ 0.42
BRCA1-223ENST00000494123 RAI14Q9P0K7 980 aa17.69■□□□□ 0.42
BRCA1-223ENST00000494123 IQCA1LA6NCM1 817 aa17.69■□□□□ 0.42
BRCA1-223ENST00000494123 MAP4K4O95819 1239 aaPredicted RBP17.69■□□□□ 0.42
BRCA1-223ENST00000494123 ANTXR1Q9H6X2 564 aa17.69■□□□□ 0.42
BRCA1-223ENST00000494123 PIH1D3Q9NQM4 214 aaKnown RBP17.69■□□□□ 0.42
BRCA1-223ENST00000494123 HACL1Q9UJ83 578 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms