RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 A0A087WWV3 80 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 NEURL1BA8MQ27 555 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 EFCAB8A8MWE9 144 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 TADA3O75528 432 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 EVCP57679 992 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 APOBRQ0VD83 1088 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 NEXNQ0ZGT2 675 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 GCKRQ14397 625 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 C1orf141Q5JVX7 400 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 TEX35Q5T0J7 233 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 MPRIPQ6WCQ1 1025 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 CCDC129Q6ZRS4 1044 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 KBTBD3Q8NAB2 608 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 LINC00301Q8NCQ3 95 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 LRRN4CLQ8ND94 238 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 UBXN4Q92575 508 aa8.47□□□□□ -1.05
USP48-206ENST00000464577 CBFA2T2O43439 604 aa8.46□□□□□ -1.05
USP48-206ENST00000464577 SLC3A2P08195 630 aaKnown RBP8.46□□□□□ -1.05
USP48-206ENST00000464577 RGPD2P0DJD1 1756 aa8.46□□□□□ -1.05
USP48-206ENST00000464577 PDIA3P30101 505 aaKnown RBP8.46□□□□□ -1.05
USP48-206ENST00000464577 NDUFA8P51970 172 aa8.46□□□□□ -1.05
USP48-206ENST00000464577 PDIA6Q15084 440 aa8.46□□□□□ -1.05
USP48-206ENST00000464577 STK38Q15208 465 aa8.46□□□□□ -1.05
USP48-206ENST00000464577 LRRFIP1Q32MZ4 808 aaKnown RBP8.46□□□□□ -1.05
USP48-206ENST00000464577 RABL6Q3YEC7 729 aaPredicted RBP8.46□□□□□ -1.05
USP48-206ENST00000464577 CCDC158Q5M9N0 1113 aa8.46□□□□□ -1.05
USP48-206ENST00000464577 BRAPQ7Z569 592 aa8.46□□□□□ -1.05
USP48-206ENST00000464577 LRRC2Q9BYS8 371 aa8.46□□□□□ -1.05
USP48-206ENST00000464577 TMX1Q9H3N1 280 aa8.46□□□□□ -1.05
USP48-206ENST00000464577 SPEF2Q9C093 1822 aa8.46□□□□□ -1.06
USP48-206ENST00000464577 A0A1B0GVL5 298 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 ERICH4A6NGS2 130 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 FOSBP53539 338 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 FANCCQ00597 558 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 TFCP2Q12800 502 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 EPHA10Q5JZY3 1008 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 TRIM65Q6PJ69 517 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 RIC3Q7Z5B4 369 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 HOMER1Q86YM7 354 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 TXLNBQ8N3L3 684 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 MNS1Q8NEH6 495 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 KLHDC4Q8TBB5 520 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 SEC62Q99442 399 aaKnown RBP8.45□□□□□ -1.06
USP48-206ENST00000464577 DNAJC2Q99543 621 aaKnown RBP8.45□□□□□ -1.06
USP48-206ENST00000464577 METTL22Q9BUU2 404 aaPredicted RBP8.45□□□□□ -1.06
USP48-206ENST00000464577 BCL11BQ9C0K0 894 aaPredicted RBP8.45□□□□□ -1.06
USP48-206ENST00000464577 SPTLC2O15270 562 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 ZSCAN12O43309 604 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 CDK11BP21127 795 aaKnown RBP8.45□□□□□ -1.06
USP48-206ENST00000464577 CMA1P23946 247 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 FXR2P51116 673 aaKnown RBP eCLIP8.45□□□□□ -1.06
USP48-206ENST00000464577 PTPN12Q05209 780 aaKnown RBP8.45□□□□□ -1.06
USP48-206ENST00000464577 SF3A1Q15459 793 aaKnown RBP8.45□□□□□ -1.06
USP48-206ENST00000464577 MUM1L1Q5H9M0 696 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 KCNH5Q8NCM2 988 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 C5P01031 1676 aa8.45□□□□□ -1.06
USP48-206ENST00000464577 PRAMEF22A3QJZ6 481 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 GOLGA6L9A6NEM1 432 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 E7EWF7 191 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 NPHP1O15259 732 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 FDPSP14324 419 aaKnown RBP8.44□□□□□ -1.06
USP48-206ENST00000464577 CCT2P78371 535 aaKnown RBP8.44□□□□□ -1.06
USP48-206ENST00000464577 ZMYM1Q5SVZ6 1142 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 ERCC4Q92889 916 aaPredicted RBP8.44□□□□□ -1.06
USP48-206ENST00000464577 MPHOSPH8Q99549 860 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 DBNDD2Q9BQY9 259 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 NCOA5Q9HCD5 579 aaKnown RBP8.44□□□□□ -1.06
USP48-206ENST00000464577 TUBE1Q9UJT0 475 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 PARP3Q9Y6F1 533 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 DDX60Q8IY21 1712 aaKnown RBP8.44□□□□□ -1.06
USP48-206ENST00000464577 TMEM94Q12767 1356 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.44□□□□□ -1.06
USP48-206ENST00000464577 ZNF202O95125 648 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 HNRNPH2P55795 449 aaKnown RBP8.44□□□□□ -1.06
USP48-206ENST00000464577 GUCY1B3Q02153 619 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 AXDND1Q5T1B0 1012 aaPredicted RBP8.44□□□□□ -1.06
USP48-206ENST00000464577 MYSM1Q5VVJ2 828 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 DDX46Q7L014 1031 aaKnown RBP8.44□□□□□ -1.06
USP48-206ENST00000464577 VSTM4Q8IW00 320 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 REXO1L1PQ8IX06 675 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 FBXW7Q969H0 707 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 C8orf76Q96K31 380 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 HSD3B7Q9H2F3 369 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 GPR108Q9NPR9 543 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 CLIC4Q9Y696 253 aa8.44□□□□□ -1.06
USP48-206ENST00000464577 FAM237AA0A1B0GTK4 181 aa8.43□□□□□ -1.06
USP48-206ENST00000464577 ARHGAP6O43182 974 aa8.43□□□□□ -1.06
USP48-206ENST00000464577 DHX16O60231 1041 aaKnown RBP8.43□□□□□ -1.06
USP48-206ENST00000464577 PFKFB1P16118 471 aa8.43□□□□□ -1.06
USP48-206ENST00000464577 MYL5Q02045 173 aa8.43□□□□□ -1.06
USP48-206ENST00000464577 AIMP1Q12904 312 aaKnown RBP8.43□□□□□ -1.06
USP48-206ENST00000464577 ANO1Q5XXA6 986 aa8.43□□□□□ -1.06
USP48-206ENST00000464577 GPR161Q8N6U8 529 aaKnown RBP8.43□□□□□ -1.06
USP48-206ENST00000464577 FBXO18Q8NFZ0 1043 aa8.43□□□□□ -1.06
USP48-206ENST00000464577 ANKRD24Q8TF21 1146 aa8.43□□□□□ -1.06
USP48-206ENST00000464577 MYD88Q99836 296 aa8.43□□□□□ -1.06
USP48-206ENST00000464577 PHF8Q9UPP1 1060 aa8.43□□□□□ -1.06
USP48-206ENST00000464577 URI1O94763 535 aaPredicted RBP8.42□□□□□ -1.06
USP48-206ENST00000464577 TBC1D8O95759 1140 aa8.42□□□□□ -1.06
USP48-206ENST00000464577 CHGBP05060 677 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms