RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 CHMP4AQ9BY43 222 aa23.52■■□□□ 1.36
SHOX2-203ENST00000441443 EVCP57679 992 aa23.51■■□□□ 1.35
SHOX2-203ENST00000441443 OTUD7BQ6GQQ9 843 aa23.51■■□□□ 1.35
SHOX2-203ENST00000441443 PHLPP2Q6ZVD8 1323 aa23.51■■□□□ 1.35
SHOX2-203ENST00000441443 GRM8O00222 908 aa23.51■■□□□ 1.35
SHOX2-203ENST00000441443 LLPHQ9BRT6 129 aaKnown RBP23.51■■□□□ 1.35
SHOX2-203ENST00000441443 TATP17735 454 aaPredicted RBP23.51■■□□□ 1.35
SHOX2-203ENST00000441443 SF3A1Q15459 793 aaKnown RBP23.51■■□□□ 1.35
SHOX2-203ENST00000441443 TBC1D8O95759 1140 aa23.5■■□□□ 1.35
SHOX2-203ENST00000441443 FANCCQ00597 558 aa23.5■■□□□ 1.35
SHOX2-203ENST00000441443 ZNF790Q6PG37 636 aa23.5■■□□□ 1.35
SHOX2-203ENST00000441443 CHST3Q7LGC8 479 aa23.5■■□□□ 1.35
SHOX2-203ENST00000441443 ZBTB9Q96C00 473 aa23.5■■□□□ 1.35
SHOX2-203ENST00000441443 CCDC9Q9Y3X0 531 aaKnown RBP23.5■■□□□ 1.35
SHOX2-203ENST00000441443 NCAPHQ15003 741 aa23.5■■□□□ 1.35
SHOX2-203ENST00000441443 TXLNBQ8N3L3 684 aa23.5■■□□□ 1.35
SHOX2-203ENST00000441443 CLIC4Q9Y696 253 aa23.5■■□□□ 1.35
SHOX2-203ENST00000441443 POLR3DP05423 398 aaPredicted RBP23.49■■□□□ 1.35
SHOX2-203ENST00000441443 GNL2Q13823 731 aaKnown RBP23.49■■□□□ 1.35
SHOX2-203ENST00000441443 ADALQ6DHV7 355 aa23.49■■□□□ 1.35
SHOX2-203ENST00000441443 PARP3Q9Y6F1 533 aa23.49■■□□□ 1.35
SHOX2-203ENST00000441443 U3KPZ7 1027 aaPredicted RBP23.49■■□□□ 1.35
SHOX2-203ENST00000441443 KCNJ6P48051 423 aa23.49■■□□□ 1.35
SHOX2-203ENST00000441443 SLC3A2P08195 630 aaKnown RBP23.49■■□□□ 1.35
SHOX2-203ENST00000441443 SMC1AQ14683 1233 aaKnown RBP23.49■■□□□ 1.35
SHOX2-203ENST00000441443 DPF2Q92785 391 aa23.49■■□□□ 1.35
SHOX2-203ENST00000441443 ZNF496Q96IT1 587 aaPredicted RBP23.49■■□□□ 1.35
SHOX2-203ENST00000441443 C1orf167Q5SNV9 1468 aa23.49■■□□□ 1.35
SHOX2-203ENST00000441443 TMEM94Q12767 1356 aa23.48■■□□□ 1.35
SHOX2-203ENST00000441443 EFCAB8A8MWE9 144 aa23.48■■□□□ 1.35
SHOX2-203ENST00000441443 XAGE3Q8WTP9 111 aa23.48■■□□□ 1.35
SHOX2-203ENST00000441443 A0A0G2JLW4 131 aa23.48■■□□□ 1.35
SHOX2-203ENST00000441443 DDX58O95786 925 aaKnown RBP23.48■■□□□ 1.35
SHOX2-203ENST00000441443 STK38Q15208 465 aa23.48■■□□□ 1.35
SHOX2-203ENST00000441443 COPS6Q7L5N1 327 aa23.48■■□□□ 1.35
SHOX2-203ENST00000441443 ZNF609O15014 1411 aa23.48■■□□□ 1.35
SHOX2-203ENST00000441443 TUBB4AP04350 444 aa23.47■■□□□ 1.35
SHOX2-203ENST00000441443 LRRFIP1Q32MZ4 808 aaKnown RBP23.47■■□□□ 1.35
SHOX2-203ENST00000441443 REXO1L1PQ8IX06 675 aa23.47■■□□□ 1.35
SHOX2-203ENST00000441443 TSPYL1Q9H0U9 437 aa23.47■■□□□ 1.35
SHOX2-203ENST00000441443 NEDD4P46934 1319 aa23.47■■□□□ 1.35
SHOX2-203ENST00000441443 CC2D1AQ6P1N0 951 aaPredicted RBP23.47■■□□□ 1.35
SHOX2-203ENST00000441443 DDX46Q7L014 1031 aaKnown RBP23.47■■□□□ 1.35
SHOX2-203ENST00000441443 DHX32Q7L7V1 743 aaKnown RBP23.47■■□□□ 1.35
SHOX2-203ENST00000441443 MYD88Q99836 296 aa23.47■■□□□ 1.35
SHOX2-203ENST00000441443 DBNLQ9UJU6 430 aaKnown RBP23.47■■□□□ 1.35
SHOX2-203ENST00000441443 CCDC158Q5M9N0 1113 aa23.46■■□□□ 1.35
SHOX2-203ENST00000441443 BPIFA3Q9BQP9 254 aa23.46■■□□□ 1.35
SHOX2-203ENST00000441443 DDX21Q9NR30 783 aaKnown RBP eCLIP23.46■■□□□ 1.35
SHOX2-203ENST00000441443 ZSCAN26Q16670 478 aa23.46■■□□□ 1.35
SHOX2-203ENST00000441443 ATL3Q6DD88 541 aa23.46■■□□□ 1.35
SHOX2-203ENST00000441443 TTC5Q8N0Z6 440 aa23.46■■□□□ 1.35
SHOX2-203ENST00000441443 UBXN6Q9BZV1 441 aa23.46■■□□□ 1.35
SHOX2-203ENST00000441443 LCMT1Q9UIC8 334 aa23.46■■□□□ 1.35
SHOX2-203ENST00000441443 HDAC5Q9UQL6 1122 aa23.46■■□□□ 1.35
SHOX2-203ENST00000441443 NLRP12P59046 1061 aa23.46■■□□□ 1.35
SHOX2-203ENST00000441443 LINC00301Q8NCQ3 95 aa23.46■■□□□ 1.35
SHOX2-203ENST00000441443 ZFP91Q96JP5 570 aaPredicted RBP23.46■■□□□ 1.35
SHOX2-203ENST00000441443 TRIM66O15016 1216 aa23.45■■□□□ 1.34
SHOX2-203ENST00000441443 SRRTQ9BXP5 876 aaKnown RBP23.45■■□□□ 1.34
SHOX2-203ENST00000441443 SLC52A2Q9HAB3 445 aa23.45■■□□□ 1.34
SHOX2-203ENST00000441443 RTEL1Q9NZ71 1219 aa23.45■■□□□ 1.34
SHOX2-203ENST00000441443 ZNF202O95125 648 aa23.45■■□□□ 1.34
SHOX2-203ENST00000441443 SERPINC1P01008 464 aa23.45■■□□□ 1.34
SHOX2-203ENST00000441443 UBASH3AP57075 661 aa23.45■■□□□ 1.34
SHOX2-203ENST00000441443 MCMDC2Q4G0Z9 681 aa23.45■■□□□ 1.34
SHOX2-203ENST00000441443 CCDC191Q8NCU4 936 aa23.45■■□□□ 1.34
SHOX2-203ENST00000441443 LINS1Q8NG48 757 aa23.45■■□□□ 1.34
SHOX2-203ENST00000441443 ATP5J2-PTCD1G3V325 749 aa23.44■■□□□ 1.34
SHOX2-203ENST00000441443 CCP110O43303 1012 aa23.44■■□□□ 1.34
SHOX2-203ENST00000441443 PTCD1O75127 700 aaKnown RBP23.44■■□□□ 1.34
SHOX2-203ENST00000441443 CFAP100Q494V2 611 aa23.44■■□□□ 1.34
SHOX2-203ENST00000441443 C10orf67Q8IYJ2 551 aa23.44■■□□□ 1.34
SHOX2-203ENST00000441443 PHKG2P15735 406 aa23.44■■□□□ 1.34
SHOX2-203ENST00000441443 GPS2Q13227 327 aa23.44■■□□□ 1.34
SHOX2-203ENST00000441443 HSD3B7Q9H2F3 369 aa23.44■■□□□ 1.34
SHOX2-203ENST00000441443 TNNT3P45378 269 aaPredicted RBP23.43■■□□□ 1.34
SHOX2-203ENST00000441443 NEXNQ0ZGT2 675 aa23.43■■□□□ 1.34
SHOX2-203ENST00000441443 MUM1L1Q5H9M0 696 aa23.43■■□□□ 1.34
SHOX2-203ENST00000441443 WDR24Q96S15 920 aa23.43■■□□□ 1.34
SHOX2-203ENST00000441443 GJB4Q9NTQ9 266 aa23.43■■□□□ 1.34
SHOX2-203ENST00000441443 A0A1W2PQ27 194 aa23.43■■□□□ 1.34
SHOX2-203ENST00000441443 A0A1W2PQ64 194 aa23.43■■□□□ 1.34
SHOX2-203ENST00000441443 A0A1W2PQD8 194 aa23.43■■□□□ 1.34
SHOX2-203ENST00000441443 TMEM232C9JQI7 657 aa23.43■■□□□ 1.34
SHOX2-203ENST00000441443 EPHA10Q5JZY3 1008 aa23.43■■□□□ 1.34
SHOX2-203ENST00000441443 CERS3Q8IU89 383 aa23.43■■□□□ 1.34
SHOX2-203ENST00000441443 CARMIL3Q8ND23 1372 aa23.43■■□□□ 1.34
SHOX2-203ENST00000441443 VWA3AA6NCI4 1184 aa23.43■■□□□ 1.34
SHOX2-203ENST00000441443 FDPSP14324 419 aaKnown RBP23.43■■□□□ 1.34
SHOX2-203ENST00000441443 PDIA6Q15084 440 aa23.43■■□□□ 1.34
SHOX2-203ENST00000441443 SALL1Q9NSC2 1324 aa23.42■■□□□ 1.34
SHOX2-203ENST00000441443 MYH15Q9Y2K3 1946 aa23.42■■□□□ 1.34
SHOX2-203ENST00000441443 IGKV5-2P06315 115 aa23.42■■□□□ 1.34
SHOX2-203ENST00000441443 PDIA3P30101 505 aaKnown RBP23.42■■□□□ 1.34
SHOX2-203ENST00000441443 GNG11P61952 73 aa23.42■■□□□ 1.34
SHOX2-203ENST00000441443 RSPH14Q9UHP6 348 aa23.42■■□□□ 1.34
SHOX2-203ENST00000441443 TAOK2Q9UL54 1235 aa23.42■■□□□ 1.34
SHOX2-203ENST00000441443 TPM1P09493 284 aa23.42■■□□□ 1.34
SHOX2-203ENST00000441443 ATP5JP18859 108 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms