RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 KARSQ15046 597 aaKnown RBP13.75□□□□□ -0.21
HMGB1-206ENST00000405805 PGBD1Q96JS3 809 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 TMEM51Q9NW97 253 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 ABCF2Q9UG63 623 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 CTNNA3Q9UI47 895 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 TBC1D2BQ9UPU7 963 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 AGLP35573 1532 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 SLU7O95391 586 aaKnown RBP13.75□□□□□ -0.21
HMGB1-206ENST00000405805 MICALL1Q8N3F8 863 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 JMYQ8N9B5 988 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 OVOS2A0A0J9YW53 1432 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 OVOS2Q6IE36 1432 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 DLC1Q96QB1 1528 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 USP27XA6NNY8 438 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 HMGB1P09429 215 aaKnown RBP13.75□□□□□ -0.21
HMGB1-206ENST00000405805 SLC26A6Q9BXS9 759 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 STX17P56962 302 aa13.74□□□□□ -0.21
HMGB1-206ENST00000405805 POLA2Q14181 598 aa13.74□□□□□ -0.21
HMGB1-206ENST00000405805 ALG1Q9BT22 464 aa13.74□□□□□ -0.21
HMGB1-206ENST00000405805 XPO4Q9C0E2 1151 aaKnown RBP13.74□□□□□ -0.21
HMGB1-206ENST00000405805 HOOK1Q9UJC3 728 aaKnown RBP13.74□□□□□ -0.21
HMGB1-206ENST00000405805 CRB1P82279 1406 aa13.74□□□□□ -0.21
HMGB1-206ENST00000405805 A1BGP04217 495 aa13.74□□□□□ -0.21
HMGB1-206ENST00000405805 TPM1P09493 284 aa13.74□□□□□ -0.21
HMGB1-206ENST00000405805 PHKBQ93100 1093 aa13.74□□□□□ -0.21
HMGB1-206ENST00000405805 ZKSCAN3Q9BRR0 538 aa13.74□□□□□ -0.21
HMGB1-206ENST00000405805 CDR1P51861 262 aa13.74□□□□□ -0.21
HMGB1-206ENST00000405805 FAM160A1Q05DH4 1040 aa13.74□□□□□ -0.21
HMGB1-206ENST00000405805 LDHAL6AQ6ZMR3 332 aa13.74□□□□□ -0.21
HMGB1-206ENST00000405805 AIDAQ96BJ3 306 aa13.74□□□□□ -0.21
HMGB1-206ENST00000405805 CDC42BPGQ6DT37 1551 aa13.74□□□□□ -0.21
HMGB1-206ENST00000405805 GABPB1Q06547 395 aaPredicted RBP13.73□□□□□ -0.21
HMGB1-206ENST00000405805 CADPS2Q86UW7 1296 aa13.73□□□□□ -0.21
HMGB1-206ENST00000405805 SSH2Q76I76 1423 aa13.73□□□□□ -0.21
HMGB1-206ENST00000405805 KIAA0754O94854 1291 aa13.73□□□□□ -0.21
HMGB1-206ENST00000405805 AFMP43652 599 aa13.73□□□□□ -0.21
HMGB1-206ENST00000405805 TEX2Q8IWB9 1127 aa13.73□□□□□ -0.21
HMGB1-206ENST00000405805 IFIT3O14879 490 aaKnown RBP13.73□□□□□ -0.21
HMGB1-206ENST00000405805 VPS37DQ86XT2 251 aa13.73□□□□□ -0.21
HMGB1-206ENST00000405805 LRRC8AQ8IWT6 810 aa13.73□□□□□ -0.21
HMGB1-206ENST00000405805 ZNF710Q8N1W2 664 aa13.73□□□□□ -0.21
HMGB1-206ENST00000405805 USP31Q70CQ4 1352 aa13.73□□□□□ -0.21
HMGB1-206ENST00000405805 NEURL1BA8MQ27 555 aa13.72□□□□□ -0.21
HMGB1-206ENST00000405805 ZSCAN20P17040 1043 aaPredicted RBP13.72□□□□□ -0.21
HMGB1-206ENST00000405805 METAP2P50579 478 aaKnown RBP eCLIP13.72□□□□□ -0.21
HMGB1-206ENST00000405805 TOB2Q14106 344 aaPredicted RBP13.72□□□□□ -0.21
HMGB1-206ENST00000405805 NEK11Q8NG66 645 aa13.72□□□□□ -0.21
HMGB1-206ENST00000405805 FAM89AQ96GI7 184 aa13.72□□□□□ -0.21
HMGB1-206ENST00000405805 SPATA31D1Q6ZQQ2 1576 aa13.72□□□□□ -0.21
HMGB1-206ENST00000405805 A0A1B0GUL7 405 aa13.72□□□□□ -0.21
HMGB1-206ENST00000405805 GSDMDP57764 484 aa13.72□□□□□ -0.21
HMGB1-206ENST00000405805 TSR1Q2NL82 804 aaKnown RBP13.72□□□□□ -0.21
HMGB1-206ENST00000405805 PPFIBP1Q86W92 1011 aa13.72□□□□□ -0.21
HMGB1-206ENST00000405805 TXLNBQ8N3L3 684 aa13.72□□□□□ -0.21
HMGB1-206ENST00000405805 ANKRD20A12PQ8NF67 263 aa13.72□□□□□ -0.21
HMGB1-206ENST00000405805 CWC25Q9NXE8 425 aaPredicted RBP13.72□□□□□ -0.21
HMGB1-206ENST00000405805 GOLGA8AA7E2F4 631 aa13.72□□□□□ -0.21
HMGB1-206ENST00000405805 SARNPP82979 210 aaKnown RBP13.72□□□□□ -0.21
HMGB1-206ENST00000405805 CTR9Q6PD62 1173 aa13.72□□□□□ -0.21
HMGB1-206ENST00000405805 IARSP41252 1262 aaKnown RBP13.72□□□□□ -0.21
HMGB1-206ENST00000405805 IFIT5Q13325 482 aaKnown RBP13.72□□□□□ -0.21
HMGB1-206ENST00000405805 SLC9C2Q5TAH2 1124 aa13.72□□□□□ -0.21
HMGB1-206ENST00000405805 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.72□□□□□ -0.21
HMGB1-206ENST00000405805 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.72□□□□□ -0.21
HMGB1-206ENST00000405805 NDUFA8P51970 172 aa13.71□□□□□ -0.21
HMGB1-206ENST00000405805 DPCR1Q3MIW9 517 aa13.71□□□□□ -0.21
HMGB1-206ENST00000405805 LRRC24Q50LG9 513 aa13.71□□□□□ -0.21
HMGB1-206ENST00000405805 LZTFL1Q9NQ48 299 aa13.71□□□□□ -0.21
HMGB1-206ENST00000405805 NEMFO60524 1076 aa13.71□□□□□ -0.21
HMGB1-206ENST00000405805 MCM6Q14566 821 aa13.71□□□□□ -0.21
HMGB1-206ENST00000405805 PI16Q6UXB8 463 aa13.71□□□□□ -0.21
HMGB1-206ENST00000405805 CCDC91Q7Z6B0 441 aa13.71□□□□□ -0.21
HMGB1-206ENST00000405805 TRIM22Q8IYM9 498 aa13.71□□□□□ -0.21
HMGB1-206ENST00000405805 CMTR1Q8N1G2 835 aaKnown RBP13.71□□□□□ -0.21
HMGB1-206ENST00000405805 CLIC4Q9Y696 253 aa13.71□□□□□ -0.21
HMGB1-206ENST00000405805 E7EWF7 191 aa13.71□□□□□ -0.22
HMGB1-206ENST00000405805 ADGRB2O60241 1585 aa13.71□□□□□ -0.22
HMGB1-206ENST00000405805 ADD1P35611 737 aaKnown RBP13.71□□□□□ -0.22
HMGB1-206ENST00000405805 DHX8Q14562 1220 aaKnown RBP13.71□□□□□ -0.22
HMGB1-206ENST00000405805 TMEM67Q5HYA8 995 aa13.71□□□□□ -0.22
HMGB1-206ENST00000405805 NAPBQ9H115 298 aa13.71□□□□□ -0.22
HMGB1-206ENST00000405805 BABAM1Q9NWV8 329 aa13.71□□□□□ -0.22
HMGB1-206ENST00000405805 PCDHA7Q9UN72 937 aa13.71□□□□□ -0.22
HMGB1-206ENST00000405805 NCBP1Q09161 790 aaKnown RBP13.7□□□□□ -0.22
HMGB1-206ENST00000405805 NCOA7Q8NI08 942 aa13.7□□□□□ -0.22
HMGB1-206ENST00000405805 AIFM3Q96NN9 605 aa13.7□□□□□ -0.22
HMGB1-206ENST00000405805 CARD6Q9BX69 1037 aa13.7□□□□□ -0.22
HMGB1-206ENST00000405805 SLC52A2Q9HAB3 445 aa13.7□□□□□ -0.22
HMGB1-206ENST00000405805 PHACTR2O75167 634 aa13.7□□□□□ -0.22
HMGB1-206ENST00000405805 ZNF202O95125 648 aa13.7□□□□□ -0.22
HMGB1-206ENST00000405805 ZNF827Q17R98 1081 aa13.7□□□□□ -0.22
HMGB1-206ENST00000405805 KIF4BQ2VIQ3 1234 aa13.7□□□□□ -0.22
HMGB1-206ENST00000405805 TRMT44Q8IYL2 757 aaKnown RBP13.7□□□□□ -0.22
HMGB1-206ENST00000405805 KBTBD3Q8NAB2 608 aa13.7□□□□□ -0.22
HMGB1-206ENST00000405805 ZNF397Q8NF99 534 aaPredicted RBP13.7□□□□□ -0.22
HMGB1-206ENST00000405805 CCDC12Q8WUD4 166 aaPredicted RBP13.7□□□□□ -0.22
HMGB1-206ENST00000405805 METTL22Q9BUU2 404 aaPredicted RBP13.7□□□□□ -0.22
HMGB1-206ENST00000405805 PUS3Q9BZE2 481 aaKnown RBP13.7□□□□□ -0.22
HMGB1-206ENST00000405805 A0A0G2JLW4 131 aa13.7□□□□□ -0.22
HMGB1-206ENST00000405805 hCG_1642624A0A1W2PR95 340 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms