RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 GTF2E1P29083 439 aaPredicted RBP17.85■□□□□ 0.45
GPC3-202ENST00000394299 ABCC12Q96J65 1359 aa17.85■□□□□ 0.45
GPC3-202ENST00000394299 RREB1Q92766 1687 aa17.85■□□□□ 0.45
GPC3-202ENST00000394299 SPEF2Q9C093 1822 aa17.85■□□□□ 0.45
GPC3-202ENST00000394299 HMGB1P09429 215 aaKnown RBP17.84■□□□□ 0.45
GPC3-202ENST00000394299 UQCRFS1P1P0C7P4 283 aa17.84■□□□□ 0.45
GPC3-202ENST00000394299 CCNL1Q9UK58 526 aaPredicted RBP17.84■□□□□ 0.45
GPC3-202ENST00000394299 DDX60Q8IY21 1712 aaKnown RBP17.84■□□□□ 0.45
GPC3-202ENST00000394299 TCRBV5S4A2TA0A5A2 114 aa17.84■□□□□ 0.45
GPC3-202ENST00000394299 APPP05067 770 aa17.84■□□□□ 0.45
GPC3-202ENST00000394299 TTF1Q15361 905 aaPredicted RBP17.84■□□□□ 0.45
GPC3-202ENST00000394299 IMMTQ16891 758 aaKnown RBP17.84■□□□□ 0.45
GPC3-202ENST00000394299 MEX3CQ5U5Q3 659 aaKnown RBP17.84■□□□□ 0.45
GPC3-202ENST00000394299 RBSNQ9H1K0 784 aa17.84■□□□□ 0.45
GPC3-202ENST00000394299 CTDNEP1O95476 244 aa17.83■□□□□ 0.45
GPC3-202ENST00000394299 RAB11FIP4Q86YS3 637 aa17.83■□□□□ 0.45
GPC3-202ENST00000394299 MAGEB6Q8N7X4 407 aa17.83■□□□□ 0.45
GPC3-202ENST00000394299 CELF1Q92879 486 aaKnown RBP17.83■□□□□ 0.45
GPC3-202ENST00000394299 INCENPQ9NQS7 918 aa17.83■□□□□ 0.45
GPC3-202ENST00000394299 LAMA4Q16363 1823 aa17.83■□□□□ 0.44
GPC3-202ENST00000394299 TAF1P21675 1872 aa17.83■□□□□ 0.44
GPC3-202ENST00000394299 MBD3O95983 291 aa17.83■□□□□ 0.44
GPC3-202ENST00000394299 HSPA1LP34931 641 aa17.83■□□□□ 0.44
GPC3-202ENST00000394299 GJD4Q96KN9 370 aaPredicted RBP17.83■□□□□ 0.44
GPC3-202ENST00000394299 NBPF3Q9H094 633 aa17.83■□□□□ 0.44
GPC3-202ENST00000394299 CTNNA3Q9UI47 895 aa17.83■□□□□ 0.44
GPC3-202ENST00000394299 CNTNAP4Q9C0A0 1308 aa17.83■□□□□ 0.44
GPC3-202ENST00000394299 ZNF213O14771 459 aa17.82■□□□□ 0.44
GPC3-202ENST00000394299 RPS6KA4O75676 772 aa17.82■□□□□ 0.44
GPC3-202ENST00000394299 PHF14O94880 888 aa17.82■□□□□ 0.44
GPC3-202ENST00000394299 GYG1P46976 350 aa17.82■□□□□ 0.44
GPC3-202ENST00000394299 TFIP11Q9UBB9 837 aaKnown RBP17.82■□□□□ 0.44
GPC3-202ENST00000394299 ISY1Q9ULR0 285 aaKnown RBP17.82■□□□□ 0.44
GPC3-202ENST00000394299 COL5A3P25940 1745 aaPredicted RBP17.82■□□□□ 0.44
GPC3-202ENST00000394299 PFKFB2O60825 505 aa17.82■□□□□ 0.44
GPC3-202ENST00000394299 UBE3CQ15386 1083 aa17.82■□□□□ 0.44
GPC3-202ENST00000394299 ARHGEF1Q92888 912 aaKnown RBP17.82■□□□□ 0.44
GPC3-202ENST00000394299 AGXT2Q9BYV1 514 aa17.82■□□□□ 0.44
GPC3-202ENST00000394299 LRP5O75197 1615 aa17.81■□□□□ 0.44
GPC3-202ENST00000394299 PDIA3P30101 505 aaKnown RBP17.81■□□□□ 0.44
GPC3-202ENST00000394299 ZSCAN25Q6NSZ9 544 aa17.81■□□□□ 0.44
GPC3-202ENST00000394299 TMEM87AQ8NBN3 555 aa17.81■□□□□ 0.44
GPC3-202ENST00000394299 NARFQ9UHQ1 456 aa17.81■□□□□ 0.44
GPC3-202ENST00000394299 ANTXR2P58335 489 aa17.81■□□□□ 0.44
GPC3-202ENST00000394299 SLC51AQ86UW1 340 aa17.81■□□□□ 0.44
GPC3-202ENST00000394299 ANKRD18AQ8IVF6 992 aa17.81■□□□□ 0.44
GPC3-202ENST00000394299 NSUN7Q8NE18 718 aaKnown RBP17.81■□□□□ 0.44
GPC3-202ENST00000394299 ATP6V1DQ9Y5K8 247 aa17.81■□□□□ 0.44
GPC3-202ENST00000394299 SF3B3Q15393 1217 aaKnown RBP17.8■□□□□ 0.44
GPC3-202ENST00000394299 TBC1D10CQ8IV04 446 aa17.8■□□□□ 0.44
GPC3-202ENST00000394299 STRBPQ96SI9 672 aaKnown RBP17.8■□□□□ 0.44
GPC3-202ENST00000394299 CDC5LQ99459 802 aaKnown RBP17.8■□□□□ 0.44
GPC3-202ENST00000394299 ARMT1Q9H993 441 aa17.8■□□□□ 0.44
GPC3-202ENST00000394299 AFF2P51816 1311 aa17.8■□□□□ 0.44
GPC3-202ENST00000394299 SPATA31A6Q5VVP1 1343 aa17.8■□□□□ 0.44
GPC3-202ENST00000394299 PRC1O43663 620 aa17.8■□□□□ 0.44
GPC3-202ENST00000394299 PRKAB2O43741 272 aa17.8■□□□□ 0.44
GPC3-202ENST00000394299 ZPR1O75312 459 aa17.8■□□□□ 0.44
GPC3-202ENST00000394299 MB21D2Q8IYB1 491 aaPredicted RBP17.8■□□□□ 0.44
GPC3-202ENST00000394299 AIDAQ96BJ3 306 aa17.8■□□□□ 0.44
GPC3-202ENST00000394299 SETDB2Q96T68 719 aa17.8■□□□□ 0.44
GPC3-202ENST00000394299 RTL9Q8NET4 1388 aa17.79■□□□□ 0.44
GPC3-202ENST00000394299 MBD4O95243 580 aa17.79■□□□□ 0.44
GPC3-202ENST00000394299 PDCP20941 246 aa17.79■□□□□ 0.44
GPC3-202ENST00000394299 NASPP49321 788 aaPredicted RBP17.79■□□□□ 0.44
GPC3-202ENST00000394299 NBPF5PQ86XG9 351 aaPredicted RBP17.79■□□□□ 0.44
GPC3-202ENST00000394299 MINPP1Q9UNW1 487 aa17.79■□□□□ 0.44
GPC3-202ENST00000394299 RTCBQ9Y3I0 505 aaKnown RBP17.79■□□□□ 0.44
GPC3-202ENST00000394299 RC3H1Q5TC82 1133 aaKnown RBP17.79■□□□□ 0.44
GPC3-202ENST00000394299 LRSAM1Q6UWE0 723 aa17.79■□□□□ 0.44
GPC3-202ENST00000394299 TTC6Q86TZ1 520 aa17.79■□□□□ 0.44
GPC3-202ENST00000394299 SMARCC2Q8TAQ2 1214 aa17.79■□□□□ 0.44
GPC3-202ENST00000394299 PTPDC1A2A3K4 754 aa17.78■□□□□ 0.44
GPC3-202ENST00000394299 KLRK1P26718 216 aa17.78■□□□□ 0.44
GPC3-202ENST00000394299 MAP3K12Q12852 859 aa17.78■□□□□ 0.44
GPC3-202ENST00000394299 SEPT12Q8IYM1 358 aa17.78■□□□□ 0.44
GPC3-202ENST00000394299 STK11IPQ8N1F8 1099 aa17.78■□□□□ 0.44
GPC3-202ENST00000394299 MIGA1Q8NAN2 632 aa17.78■□□□□ 0.44
GPC3-202ENST00000394299 UBE2HP62256 183 aa17.77■□□□□ 0.44
GPC3-202ENST00000394299 GUCY1B3Q02153 619 aa17.77■□□□□ 0.44
GPC3-202ENST00000394299 CYB5R4Q7L1T6 521 aa17.77■□□□□ 0.44
GPC3-202ENST00000394299 FAM184AQ8NB25 1140 aa17.77■□□□□ 0.44
GPC3-202ENST00000394299 RNF214Q8ND24 703 aa17.77■□□□□ 0.44
GPC3-202ENST00000394299 NCOA7Q8NI08 942 aa17.77■□□□□ 0.44
GPC3-202ENST00000394299 EPB41L4AQ9HCS5 686 aaPredicted RBP17.77■□□□□ 0.44
GPC3-202ENST00000394299 LRRC4BQ9NT99 713 aa17.77■□□□□ 0.44
GPC3-202ENST00000394299 TACC3Q9Y6A5 838 aa17.77■□□□□ 0.44
GPC3-202ENST00000394299 CICQ96RK0 1608 aaPredicted RBP17.77■□□□□ 0.44
GPC3-202ENST00000394299 SENP2Q9HC62 589 aa17.77■□□□□ 0.44
GPC3-202ENST00000394299 BSDC1Q9NW68 430 aaPredicted RBP17.77■□□□□ 0.44
GPC3-202ENST00000394299 LRP2BPQ9P2M1 347 aa17.77■□□□□ 0.44
GPC3-202ENST00000394299 ABCF2Q9UG63 623 aa17.77■□□□□ 0.44
GPC3-202ENST00000394299 BTAF1O14981 1849 aa17.77■□□□□ 0.43
GPC3-202ENST00000394299 MYH7P12883 1935 aa17.76■□□□□ 0.43
GPC3-202ENST00000394299 MCM5P33992 734 aa17.76■□□□□ 0.43
GPC3-202ENST00000394299 CTDSPL2Q05D32 466 aa17.76■□□□□ 0.43
GPC3-202ENST00000394299 SLC10A5Q5PT55 438 aa17.76■□□□□ 0.43
GPC3-202ENST00000394299 FAM196AQ6ZSG2 479 aa17.76■□□□□ 0.43
GPC3-202ENST00000394299 ADGRA1Q86SQ6 560 aa17.76■□□□□ 0.43
GPC3-202ENST00000394299 LCORLQ8N3X6 602 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms