RNA–Protein interactions for RNA: ENST00000380443.5

VPS16-201, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 1 (best)

Gene VPS16, Length 1,825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-201ENST00000380443 CDC5LQ99459 802 aaKnown RBP27.33■■□□□ 1.97
VPS16-201ENST00000380443 KIF3AQ9Y496 699 aa27.33■■□□□ 1.97
VPS16-201ENST00000380443 LAMA4Q16363 1823 aa27.33■■□□□ 1.97
VPS16-201ENST00000380443 TMEM63CQ9P1W3 806 aa27.32■■□□□ 1.96
VPS16-201ENST00000380443 WDR19Q8NEZ3 1342 aa27.32■■□□□ 1.96
VPS16-201ENST00000380443 LRSAM1Q6UWE0 723 aa27.32■■□□□ 1.96
VPS16-201ENST00000380443 LINC00116Q8NCU8 138 aa27.32■■□□□ 1.96
VPS16-201ENST00000380443 BRF1Q92994 677 aa27.32■■□□□ 1.96
VPS16-201ENST00000380443 ZNF274Q96GC6 653 aaPredicted RBP27.32■■□□□ 1.96
VPS16-201ENST00000380443 VPS37CA5D8V6 355 aaPredicted RBP27.31■■□□□ 1.96
VPS16-201ENST00000380443 GPAA1O43292 621 aa27.31■■□□□ 1.96
VPS16-201ENST00000380443 LETM1O95202 739 aaPredicted RBP27.3■■□□□ 1.96
VPS16-201ENST00000380443 PHKA1P46020 1223 aa27.3■■□□□ 1.96
VPS16-201ENST00000380443 HMGN5P82970 282 aaKnown RBP27.3■■□□□ 1.96
VPS16-201ENST00000380443 SF3B3Q15393 1217 aaKnown RBP27.3■■□□□ 1.96
VPS16-201ENST00000380443 SLC9C2Q5TAH2 1124 aa27.3■■□□□ 1.96
VPS16-201ENST00000380443 ANP32BQ92688 251 aaKnown RBP27.3■■□□□ 1.96
VPS16-201ENST00000380443 CAMKK2Q96RR4 588 aa27.3■■□□□ 1.96
VPS16-201ENST00000380443 PUS7LQ9H0K6 701 aaKnown RBP27.3■■□□□ 1.96
VPS16-201ENST00000380443 CNPY2Q9Y2B0 182 aa27.3■■□□□ 1.96
VPS16-201ENST00000380443 BTAF1O14981 1849 aa27.3■■□□□ 1.96
VPS16-201ENST00000380443 FGAP02671 866 aa27.3■■□□□ 1.96
VPS16-201ENST00000380443 EVCP57679 992 aa27.3■■□□□ 1.96
VPS16-201ENST00000380443 SMARCC2Q8TAQ2 1214 aa27.3■■□□□ 1.96
VPS16-201ENST00000380443 RGPD3A6NKT7 1758 aaPredicted RBP27.29■■□□□ 1.96
VPS16-201ENST00000380443 RGPD4Q7Z3J3 1758 aa27.29■■□□□ 1.96
VPS16-201ENST00000380443 EZH2Q15910 746 aaKnown RBP27.29■■□□□ 1.96
VPS16-201ENST00000380443 STK3Q13188 491 aa27.28■■□□□ 1.96
VPS16-201ENST00000380443 SLC10A5Q5PT55 438 aa27.28■■□□□ 1.96
VPS16-201ENST00000380443 PI16Q6UXB8 463 aa27.28■■□□□ 1.96
VPS16-201ENST00000380443 SPATA5Q8NB90 893 aa27.28■■□□□ 1.96
VPS16-201ENST00000380443 PANK2Q9BZ23 570 aa27.28■■□□□ 1.96
VPS16-201ENST00000380443 SEC31BQ9NQW1 1179 aa27.28■■□□□ 1.96
VPS16-201ENST00000380443 RBM27Q9P2N5 1060 aaKnown RBP27.28■■□□□ 1.96
VPS16-201ENST00000380443 FAM177BA6PVY3 158 aa27.27■■□□□ 1.96
VPS16-201ENST00000380443 FOXP2O15409 715 aa27.27■■□□□ 1.96
VPS16-201ENST00000380443 NASPP49321 788 aaPredicted RBP27.27■■□□□ 1.96
VPS16-201ENST00000380443 KRT85P78386 507 aa27.27■■□□□ 1.96
VPS16-201ENST00000380443 PIH1D3Q9NQM4 214 aaKnown RBP27.27■■□□□ 1.96
VPS16-201ENST00000380443 NSFL1CQ9UNZ2 370 aaKnown RBP27.27■■□□□ 1.96
VPS16-201ENST00000380443 TCHHQ07283 1943 aa27.27■■□□□ 1.96
VPS16-201ENST00000380443 ZNF213O14771 459 aa27.27■■□□□ 1.96
VPS16-201ENST00000380443 RPS6KA4O75676 772 aa27.27■■□□□ 1.96
VPS16-201ENST00000380443 MAP3K12Q12852 859 aa27.27■■□□□ 1.96
VPS16-201ENST00000380443 NYXQ9GZU5 481 aa27.27■■□□□ 1.96
VPS16-201ENST00000380443 ZMYM6O95789 1325 aa27.27■■□□□ 1.96
VPS16-201ENST00000380443 MCM5P33992 734 aa27.26■■□□□ 1.95
VPS16-201ENST00000380443 ALX1Q15699 326 aa27.26■■□□□ 1.95
VPS16-201ENST00000380443 NCOA7Q8NI08 942 aa27.26■■□□□ 1.95
VPS16-201ENST00000380443 SCN7AQ01118 1682 aa27.25■■□□□ 1.95
VPS16-201ENST00000380443 ELP1O95163 1332 aa27.25■■□□□ 1.95
VPS16-201ENST00000380443 GADD45BO75293 160 aaPredicted RBP27.25■■□□□ 1.95
VPS16-201ENST00000380443 PDE6AP16499 860 aa27.25■■□□□ 1.95
VPS16-201ENST00000380443 SCRN1Q12765 414 aa27.25■■□□□ 1.95
VPS16-201ENST00000380443 FOXD4L6Q3SYB3 417 aaPredicted RBP27.25■■□□□ 1.95
VPS16-201ENST00000380443 FOXD4L3Q6VB84 417 aaPredicted RBP27.25■■□□□ 1.95
VPS16-201ENST00000380443 ZSCAN16Q9H4T2 348 aaPredicted RBP27.25■■□□□ 1.95
VPS16-201ENST00000380443 GDPD2Q9HCC8 539 aa27.25■■□□□ 1.95
VPS16-201ENST00000380443 NARFQ9UHQ1 456 aa27.25■■□□□ 1.95
VPS16-201ENST00000380443 IDH1O75874 414 aaKnown RBP27.25■■□□□ 1.95
VPS16-201ENST00000380443 TTLL5Q6EMB2 1281 aa27.25■■□□□ 1.95
VPS16-201ENST00000380443 FAM43AQ8N2R8 423 aa27.25■■□□□ 1.95
VPS16-201ENST00000380443 HELBQ8NG08 1087 aaPredicted RBP27.25■■□□□ 1.95
VPS16-201ENST00000380443 TCRBV5S4A2TA0A5A2 114 aa27.24■■□□□ 1.95
VPS16-201ENST00000380443 DNM1Q05193 864 aaKnown RBP27.24■■□□□ 1.95
VPS16-201ENST00000380443 FAM184AQ8NB25 1140 aa27.24■■□□□ 1.95
VPS16-201ENST00000380443 SCAND2PQ9GZW5 306 aaPredicted RBP27.24■■□□□ 1.95
VPS16-201ENST00000380443 ZNF532Q9HCE3 1301 aa27.23■■□□□ 1.95
VPS16-201ENST00000380443 CCDC173Q0VFZ6 552 aa27.23■■□□□ 1.95
VPS16-201ENST00000380443 CCDC183Q5T5S1 534 aa27.23■■□□□ 1.95
VPS16-201ENST00000380443 CDC37L1Q7L3B6 337 aa27.23■■□□□ 1.95
VPS16-201ENST00000380443 RALYLQ86SE5 291 aaKnown RBP27.23■■□□□ 1.95
VPS16-201ENST00000380443 ANKRD18AQ8IVF6 992 aa27.23■■□□□ 1.95
VPS16-201ENST00000380443 CHRNDQ07001 517 aa27.23■■□□□ 1.95
VPS16-201ENST00000380443 NAA16Q6N069 864 aaPredicted RBP27.23■■□□□ 1.95
VPS16-201ENST00000380443 DOCK2Q92608 1830 aa27.23■■□□□ 1.95
VPS16-201ENST00000380443 SYCE3A1L190 88 aa27.22■■□□□ 1.95
VPS16-201ENST00000380443 APOBRQ0VD83 1088 aa27.22■■□□□ 1.95
VPS16-201ENST00000380443 TRDNQ13061 729 aa27.22■■□□□ 1.95
VPS16-201ENST00000380443 MB21D2Q8IYB1 491 aaPredicted RBP27.22■■□□□ 1.95
VPS16-201ENST00000380443 NSUN7Q8NE18 718 aaKnown RBP27.22■■□□□ 1.95
VPS16-201ENST00000380443 LRRC2Q9BYS8 371 aa27.22■■□□□ 1.95
VPS16-201ENST00000380443 BSDC1Q9NW68 430 aaPredicted RBP27.22■■□□□ 1.95
VPS16-201ENST00000380443 FIBPO43427 364 aa27.21■■□□□ 1.95
VPS16-201ENST00000380443 DHX16O60231 1041 aaKnown RBP27.21■■□□□ 1.95
VPS16-201ENST00000380443 PDIA3P30101 505 aaKnown RBP27.21■■□□□ 1.95
VPS16-201ENST00000380443 RASGRF1Q13972 1273 aa27.21■■□□□ 1.95
VPS16-201ENST00000380443 UBE4AQ14139 1066 aa27.21■■□□□ 1.95
VPS16-201ENST00000380443 RGS22Q8NE09 1264 aa27.21■■□□□ 1.95
VPS16-201ENST00000380443 GNAT2P19087 354 aa27.2■■□□□ 1.95
VPS16-201ENST00000380443 TXNRD1Q16881 649 aa27.2■■□□□ 1.95
VPS16-201ENST00000380443 ERFEQ4G0M1 354 aa27.2■■□□□ 1.95
VPS16-201ENST00000380443 AIDAQ96BJ3 306 aa27.2■■□□□ 1.95
VPS16-201ENST00000380443 GNL3LQ9NVN8 582 aaKnown RBP27.2■■□□□ 1.95
VPS16-201ENST00000380443 H3BQV1 296 aa27.2■■□□□ 1.94
VPS16-201ENST00000380443 IFFO2Q5TF58 517 aa27.2■■□□□ 1.94
VPS16-201ENST00000380443 PPP1R9BQ96SB3 815 aa27.2■■□□□ 1.94
VPS16-201ENST00000380443 STRBPQ96SI9 672 aaKnown RBP27.2■■□□□ 1.94
VPS16-201ENST00000380443 JAK2O60674 1132 aa27.19■■□□□ 1.94
VPS16-201ENST00000380443 A0A0G2JLW4 131 aa27.18■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms