RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 CLIC3O95833 236 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 CSN2P05814 226 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 HCKP08631 526 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 CSF1P09603 554 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 CCDC159P0C7I6 412 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 VSIG10L2P0DP72 767 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 CDK2P24941 298 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 SOX2P48431 317 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 ETV1P50549 477 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 GBX2P52951 348 aaPredicted RBP8.7□□□□□ -1.02
VPS39-208ENST00000564994 SLC34A1Q06495 639 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 MRPL28Q13084 256 aaKnown RBP8.7□□□□□ -1.02
VPS39-208ENST00000564994 ATXN7L3Q14CW9 347 aaPredicted RBP8.7□□□□□ -1.02
VPS39-208ENST00000564994 KLHL22Q53GT1 634 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 ZNF691Q5VV52 312 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 LPCAT4Q643R3 524 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 HEPN1Q6WQI6 88 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 C1QL4Q86Z23 238 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 NDNFQ8TB73 568 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 TSEN15Q8WW01 171 aaKnown RBP8.7□□□□□ -1.02
VPS39-208ENST00000564994 MYCBPQ99417 103 aaPredicted RBP8.7□□□□□ -1.02
VPS39-208ENST00000564994 JAM3Q9BX67 310 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 PPIL3Q9H2H8 161 aaKnown RBP8.7□□□□□ -1.02
VPS39-208ENST00000564994 ING3Q9NXR8 418 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 SMPD3Q9NY59 655 aaPredicted RBP8.7□□□□□ -1.02
VPS39-208ENST00000564994 DHDHQ9UQ10 334 aa8.7□□□□□ -1.02
VPS39-208ENST00000564994 SIRT4Q9Y6E7 314 aaPredicted RBP8.7□□□□□ -1.02
VPS39-208ENST00000564994 ODAMA1E959 279 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 FAM90A22PA8MWA6 464 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 GABRPO00591 440 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 DEGS1O15121 323 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 IGLV1-47P01700 117 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 HTR1DP28221 377 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 BLCAPP62952 87 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 ZSCAN26Q16670 478 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 C17orf58Q2M2W7 97 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 FBLN7Q53RD9 439 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 KRBOX4Q5JUW0 171 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 OR2G6Q5TZ20 316 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 LYG1Q8N1E2 194 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 ABHD12Q8N2K0 398 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 CHST4Q8NCG5 386 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 CNIH3Q8TBE1 160 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 WIPF2Q8TF74 440 aaPredicted RBP8.69□□□□□ -1.02
VPS39-208ENST00000564994 RDH12Q96NR8 316 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 GAL3ST2Q9H3Q3 398 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 ZNF286AQ9HBT8 521 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 TAS2R4Q9NYW5 299 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 TAS2R3Q9NYW6 316 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 PITPNC1Q9UKF7 332 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 PCDHGB5Q9Y5G0 923 aa8.69□□□□□ -1.02
VPS39-208ENST00000564994 TRAV24A0A0B4J272 114 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 FUOMA2VDF0 154 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 H0YJX3 145 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 F2RL2O00254 374 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 HSPB6O14558 160 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 LALBAP00709 142 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 RPSAP08865 295 aaKnown RBP8.68□□□□□ -1.02
VPS39-208ENST00000564994 CGB3P0DN86 165 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 CGB7P0DN87 165 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 CD28P10747 220 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 RAB3AP20336 220 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 CD24P25063 80 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 CD34P28906 385 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 MTNR1BP49286 362 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 BDH1Q02338 343 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 LRRC36Q1X8D7 754 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 TMEM95Q3KNT9 176 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 ELP2Q6IA86 826 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 OR52W1Q6IF63 320 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 ASCL4Q6XD76 172 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 RTN4RL2Q86UN3 420 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 ZNF555Q8NEP9 628 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 PXT1Q8NFP0 134 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 OR51T1Q8NGJ9 327 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 OR10K1Q8NGX5 313 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 HAVCR2Q8TDQ0 301 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 GPR148Q8TDV2 347 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 TNFAIP8L1Q8WVP5 186 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 OR5M11Q96RB7 305 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 NR1H4Q96RI1 486 aaPredicted RBP8.68□□□□□ -1.02
VPS39-208ENST00000564994 PRSS22Q9GZN4 317 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 WNT10AQ9GZT5 417 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 ZNF581Q9P0T4 197 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 DPM3Q9P2X0 92 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 CLEC2DQ9UHP7 191 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 DNAH3Q8TD57 4116 aa8.68□□□□□ -1.02
VPS39-208ENST00000564994 A0A087X0M5 115 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 A0A1B0GX30 115 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 ZNF729A6NN14 1252 aaPredicted RBP8.67□□□□□ -1.02
VPS39-208ENST00000564994 OGG1O15527 345 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 DCKP27707 260 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 PTGFRP43088 359 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 OR3A4PP47883 348 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 PIGYQ3MUY2 71 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 CCDC58Q4VC31 144 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 RPL22L1Q6P5R6 122 aaKnown RBP8.67□□□□□ -1.02
VPS39-208ENST00000564994 SATL1Q86VE3 508 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 DTX3Q8N9I9 347 aa8.67□□□□□ -1.02
VPS39-208ENST00000564994 Q8NFD4 153 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms