RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 TIMD4Q96H15 378 aa4.8□□□□□ -1.64
SCAF11-213ENST00000550629 GPER1Q99527 375 aa4.8□□□□□ -1.64
SCAF11-213ENST00000550629 FOXC2Q99958 501 aa4.8□□□□□ -1.64
SCAF11-213ENST00000550629 CENPOQ9BU64 300 aa4.8□□□□□ -1.64
SCAF11-213ENST00000550629 RBM38Q9H0Z9 239 aaKnown RBP4.8□□□□□ -1.64
SCAF11-213ENST00000550629 TPK1Q9H3S4 243 aa4.8□□□□□ -1.64
SCAF11-213ENST00000550629 LIME1Q9H400 295 aa4.8□□□□□ -1.64
SCAF11-213ENST00000550629 PPP1R3EQ9H7J1 279 aa4.8□□□□□ -1.64
SCAF11-213ENST00000550629 SEBOXQ9HB31 216 aaPredicted RBP4.8□□□□□ -1.64
SCAF11-213ENST00000550629 TMEM106BQ9NUM4 274 aa4.8□□□□□ -1.64
SCAF11-213ENST00000550629 C1orf123Q9NWV4 160 aa4.8□□□□□ -1.64
SCAF11-213ENST00000550629 IL36GQ9NZH8 169 aa4.8□□□□□ -1.64
SCAF11-213ENST00000550629 PLEKHA6Q9Y2H5 1048 aa4.8□□□□□ -1.64
SCAF11-213ENST00000550629 NPTNQ9Y639 398 aa4.8□□□□□ -1.64
SCAF11-213ENST00000550629 V9GY05 133 aa4.8□□□□□ -1.64
SCAF11-213ENST00000550629 POLQO75417 2590 aa4.8□□□□□ -1.64
SCAF11-213ENST00000550629 HEATR1Q9H583 2144 aaKnown RBP4.79□□□□□ -1.64
SCAF11-213ENST00000550629 ROS1P08922 2347 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 A6NLC8 198 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 SRRM5B3KS81 715 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 CLDN25C9JDP6 229 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 TRAPPC2LH3BP13 241 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 TMEM178BH3BS89 294 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 AIPO00170 330 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 CDIPTO14735 213 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 NDUFA2O43678 99 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 KDM4BO94953 1096 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 MAS1P04201 325 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 PGA5P0DJD9 388 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 TMEM225BP0DP42 221 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 MUC1P15941 1255 aaPredicted RBP4.79□□□□□ -1.64
SCAF11-213ENST00000550629 HTR2CP28335 458 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 SDC2P34741 201 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 PMELP40967 661 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 NR4A2P43354 598 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 PDLIM4P50479 330 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 ZP1P60852 638 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 MPPED2Q15777 294 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 FAM189A2Q15884 450 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 RAB11BQ15907 218 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 SMIM21Q3B7S5 101 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 NHLRC3Q5JS37 347 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 SPIN3Q5JUX0 258 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 PXDC1Q5TGL8 231 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 PRAMEF6Q5VXH4 476 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 TEX36Q5VZQ5 186 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 FAM166AQ6J272 317 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 FIP1L1Q6UN15 594 aaKnown RBP4.79□□□□□ -1.64
SCAF11-213ENST00000550629 CLEC2AQ6UVW9 174 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 SLC25A26Q70HW3 274 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 ANGPTL5Q86XS5 388 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 CALHM1Q8IU99 346 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 CLVS1Q8IUQ0 354 aaPredicted RBP4.79□□□□□ -1.64
SCAF11-213ENST00000550629 MUC20Q8N307 709 aaPredicted RBP4.79□□□□□ -1.64
SCAF11-213ENST00000550629 TRMT10AQ8TBZ6 339 aaKnown RBP4.79□□□□□ -1.64
SCAF11-213ENST00000550629 NPRL2Q8WTW4 380 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 TNFAIP8L1Q8WVP5 186 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 CCL17Q92583 94 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 NRGNQ92686 78 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 RAB1CQ92928 201 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 PTX4Q96A99 478 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 SLC25A46Q96AG3 418 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 ISOC1Q96CN7 298 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 ORAI1Q96D31 301 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 DGCR14Q96DF8 476 aaKnown RBP4.79□□□□□ -1.64
SCAF11-213ENST00000550629 CEP19Q96LK0 163 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 S100A13Q99584 98 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 FAM192AQ9GZU8 254 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 CST11Q9H112 138 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 DNTTIP1Q9H147 329 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 SLC25A32Q9H2D1 315 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 HES4Q9HCC6 221 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 HEYLQ9NQ87 328 aaPredicted RBP4.79□□□□□ -1.64
SCAF11-213ENST00000550629 MRPS28Q9Y2Q9 187 aaKnown RBP4.79□□□□□ -1.64
SCAF11-213ENST00000550629 CEPT1Q9Y6K0 416 aa4.79□□□□□ -1.64
SCAF11-213ENST00000550629 RTTNQ86VV8 2226 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 PPIAL4EA0A075B759 164 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 TRAV38-1A0A0B4J264 116 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 A0A0G2JK05 382 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 hCG_1807616A0A1W2PRN6 198 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 FAM90A10PA6NDY2 464 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 FAM90A18PA6NE21 464 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 FAM90A16PA6NEW6 464 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 FAM90A20PA6NIJ5 464 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 FAM90A8PA6NJQ4 464 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 FAM90A7PA6NKC0 464 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 FAM90A22PA8MWA6 464 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 FAM90A12PA8MX19 464 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 FAM90A5PA8MXJ8 464 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 FAM90A23PA8MXZ1 464 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 PPIAL4DF5H284 164 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 H3BMQ9 156 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.78□□□□□ -1.64
SCAF11-213ENST00000550629 LGALS8O00214 317 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 AKR7A2O43488 359 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 SSX4O60224 188 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 RHBDL1O75783 438 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 NXPH2O95156 264 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 CDRT1O95170 752 aa4.78□□□□□ -1.64
SCAF11-213ENST00000550629 FAM90A15PP0C7V4 464 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms