RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 MFSD8Q8NHS3 518 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 CA5BP1Q8WTZ4 195 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 GNPNAT1Q96EK6 184 aaPredicted RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 SLC46A1Q96NT5 459 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 MIEN1Q9BRT3 115 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 RTBDNQ9BSG5 229 aaPredicted RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 SLC7A11Q9UPY5 501 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 ZFHX4Q86UP3 3567 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 PIEZO1Q92508 2521 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 TMEM14DPA8MWL7 114 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 PITX3O75364 302 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 SRSF10O75494 262 aaKnown RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 NKX2-2O95096 273 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 CTSDP07339 412 aaPredicted RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 HRH1P35367 487 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 APOBEC1P41238 236 aaKnown RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 MEF2AQ02078 507 aaPredicted RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 RUNX2Q13950 521 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 KCNMB1Q16558 191 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 COL5A1-AS1Q5SY13 56 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 KCTD18Q6PI47 426 aaPredicted RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 SPSB3Q6PJ21 355 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 FAM219AQ8IW50 185 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 MRPL41Q8IXM3 137 aaKnown RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 NHLRC2Q8NBF2 726 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 OR51A7Q8NH64 312 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 FNDC9Q8TBE3 224 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 CASTOR1Q8WTX7 329 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 MRPL24Q96A35 216 aaKnown RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 ARSGQ96EG1 525 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 OR10C1Q96KK4 312 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 OR2A5Q96R48 311 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 URM1Q9BTM9 101 aaKnown RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 LMF2Q9BU23 707 aaKnown RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 HINT2Q9BX68 163 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 SUCNR1Q9BXA5 334 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 AICDAQ9GZX7 198 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 METTL8Q9H825 291 aaKnown RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 GPR84Q9NQS5 396 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 AURKAIP1Q9NWT8 199 aaPredicted RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 CISD1Q9NZ45 108 aaKnown RBP4.59□□□□□ -1.67
USP28-213ENST00000544967 FLRT3Q9NZU0 649 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 SLC5A6Q9Y289 635 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 B3GALT5Q9Y2C3 310 aa4.59□□□□□ -1.67
USP28-213ENST00000544967 PIGBOS1A0A0B4J2F0 54 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 FAM230AA0A1W2PPH8 454 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 C1QTNF9BB2RNN3 333 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 TNFSF13O75888 250 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 LCATP04180 440 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 SLC35G6P0C7Q6 338 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 ESDP10768 282 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 PNMTP11086 282 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 AKR1C4P17516 323 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 HNF1AP20823 631 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 BRS3P32247 399 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 SOX2P48431 317 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 DUSP2Q05923 314 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 SCGB2A2Q13296 93 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 ANKRD55Q3KP44 614 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 AKIRIN2Q53H80 203 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 TMPPEQ6ZT21 453 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 SMIM15Q7Z3B0 74 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 CSNK1A1LQ8N752 337 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 AMER3Q8N944 861 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 SLC16A11Q8NCK7 471 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 BOD1Q96IK1 185 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 NUDT22Q9BRQ3 303 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 LPAR2Q9HBW0 351 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 GPR173Q9NS66 373 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 DNAJB12Q9NXW2 375 aaKnown RBP4.59□□□□□ -1.68
USP28-213ENST00000544967 TAC3Q9UHF0 121 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 HHLA2Q9UM44 414 aa4.59□□□□□ -1.68
USP28-213ENST00000544967 LOC102723971A0A1B0GUV8 181 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 SPAARA0A1B0GVQ0 90 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 A6NIZ1 184 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 VSTM2BA6NLU5 285 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 C9orf172C9J069 976 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 AGPAT2O15120 278 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 RAMP1O60894 148 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 TOMM40O96008 361 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 RENP00797 406 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 CTXN2P0C2S0 81 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 CT45A8P0DMV1 189 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 CT45A9P0DMV2 189 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 LCN2P80188 198 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 PLAURQ03405 335 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 ICAM4Q14773 271 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 CT45A2Q5DJT8 189 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 PHYHD1Q5SRE7 291 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 GFI1BQ5VTD9 330 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 TEX43Q6ZNM6 134 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 OLIG3Q7RTU3 272 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 SLC22A24Q8N4F4 322 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 CISD2Q8N5K1 135 aaKnown RBP4.58□□□□□ -1.68
USP28-213ENST00000544967 JAGN1Q8N5M9 183 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 ZNF615Q8N8J6 731 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 OR4X1Q8NH49 305 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 MARCH1Q8TCQ1 289 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 DGAT2Q96PD7 388 aa4.58□□□□□ -1.68
USP28-213ENST00000544967 TRIB1Q96RU8 372 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms