RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 RER1O15258 196 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 LMX1BO60663 402 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 OR2A4O95047 310 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 SEMA4FO95754 770 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 TRGC2P03986 189 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 KLK2P20151 261 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 DRD1P21728 446 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 OR3A4PP47883 348 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 UCP3P55916 312 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 FOXL2P58012 376 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 SURF2Q15527 256 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-203ENST00000547825 TMEM200BQ69YZ2 307 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 PRSS54Q6PEW0 395 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 ZNF439Q8NDP4 499 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 SPTSSAQ969W0 71 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 OR2A7Q96R45 310 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 ULBP2Q9BZM5 246 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 METTL9Q9H1A3 318 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 OR14J1Q9UGF5 321 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 NSG2Q9Y328 171 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 PHF3Q92576 2039 aaKnown RBP4.81□□□□□ -1.64
LIMA1-203ENST00000547825 J3QRE1 110 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 ARPC3O15145 178 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 WDR1O75083 606 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 OR2J2O76002 312 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 MGST1P10620 155 aaKnown RBP4.81□□□□□ -1.64
LIMA1-203ENST00000547825 GABRA4P48169 554 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 POLR2HP52434 150 aaKnown RBP4.81□□□□□ -1.64
LIMA1-203ENST00000547825 ZNF121P58317 390 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-203ENST00000547825 UBE2G2P60604 165 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 SLC35A1P78382 337 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 HSF1Q00613 529 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 DPTQ07507 201 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 CD226Q15762 336 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 MPV17LQ2QL34 196 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 PLAC9Q5JTB6 97 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 ZNF343Q6P1L6 599 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 ZNF813Q6ZN06 617 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 MYPOPQ86VE0 399 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-203ENST00000547825 TSTD1Q8NFU3 115 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 OR4F5Q8NH21 305 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 RNF128Q8TEB7 428 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 GPX8Q8TED1 209 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 MRPL24Q96A35 216 aaKnown RBP4.81□□□□□ -1.64
LIMA1-203ENST00000547825 WDR34Q96EX3 536 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 CYYR1Q96J86 154 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 PACRGQ96M98 296 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-203ENST00000547825 TSPAN32Q96QS1 320 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 OR4F4Q96R69 305 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 GPHA2Q96T91 129 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 FAAP24Q9BTP7 215 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 OR51M1Q9H341 326 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 ZCCHC4Q9H5U6 513 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 KLK13Q9UKR3 277 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 PIAS3Q9Y6X2 628 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 R4GMQ9 66 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 MED13LQ71F56 2210 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 C17orf51A8MQB3 221 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 HS3ST1O14792 307 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 EML2O95834 649 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 HBE1P02100 147 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 FBP1P09467 338 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 CD79AP11912 226 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 HTR5AP47898 357 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 MRPS21P82921 87 aaKnown RBP4.81□□□□□ -1.64
LIMA1-203ENST00000547825 NHLH2Q02577 135 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 MICBQ29980 383 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 Q6ZS52 159 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 H1FNTQ75WM6 255 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-203ENST00000547825 ZNF595Q8IYB9 648 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 CA13Q8N1Q1 262 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 SLC38A9Q8NBW4 561 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 OR5C1Q8NGR4 320 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 C11orf40Q8WZ69 217 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 CFHR4Q92496 578 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 RDH5Q92781 318 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 VPS25Q9BRG1 176 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 ELOVL1Q9BW60 279 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 THAP10Q9P2Z0 257 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-203ENST00000547825 CHRNA9Q9UGM1 479 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 CA14Q9ULX7 337 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 DTX4Q9Y2E6 619 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 KCNK7Q9Y2U2 307 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 PPIL1Q9Y3C6 166 aa4.81□□□□□ -1.64
LIMA1-203ENST00000547825 INTS1Q8N201 2190 aaKnown RBP4.81□□□□□ -1.64
LIMA1-203ENST00000547825 IGHV3-15A0A0B4J1V0 119 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 ZNF320A2RRD8 509 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 XKRY2A2RUG3 117 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 OR2M5A3KFT3 312 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 OR5K4A6NMS3 321 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 MPTX1A8MV57 137 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 H0YIG0 161 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 TOX4O94842 621 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 SFT2D2O95562 160 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 PNPP00491 289 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 NGFRP08138 427 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 OR5AC1P0C628 307 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 MPGP29372 298 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 CHRNA7P36544 502 aa4.8□□□□□ -1.64
LIMA1-203ENST00000547825 PNLIPRP2P54317 469 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms