RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 CASTOR1Q8WTX7 329 aa16.15■□□□□ 0.18
USP39-202ENST00000409025 WDR89Q96FK6 387 aaPredicted RBP16.15■□□□□ 0.18
USP39-202ENST00000409025 RTBDNQ9BSG5 229 aaPredicted RBP16.15■□□□□ 0.18
USP39-202ENST00000409025 PIGMQ9H3S5 423 aa16.15■□□□□ 0.18
USP39-202ENST00000409025 RAXQ9Y2V3 346 aa16.15■□□□□ 0.18
USP39-202ENST00000409025 ESPL1Q14674 2120 aa16.15■□□□□ 0.18
USP39-202ENST00000409025 TIMM8AO60220 97 aaPredicted RBP16.15■□□□□ 0.18
USP39-202ENST00000409025 ATP6V1G1O75348 118 aa16.15■□□□□ 0.18
USP39-202ENST00000409025 PGAM2P15259 253 aa16.15■□□□□ 0.18
USP39-202ENST00000409025 DUSP1P28562 367 aa16.15■□□□□ 0.18
USP39-202ENST00000409025 ZNF83P51522 516 aa16.15■□□□□ 0.18
USP39-202ENST00000409025 BAMBIQ13145 260 aa16.15■□□□□ 0.18
USP39-202ENST00000409025 C3orf36Q3SXR2 165 aa16.15■□□□□ 0.18
USP39-202ENST00000409025 OR5M8Q8NGP6 311 aa16.15■□□□□ 0.18
USP39-202ENST00000409025 SNRNP40Q96DI7 357 aaKnown RBP16.15■□□□□ 0.18
USP39-202ENST00000409025 C14orf166Q9Y224 244 aaKnown RBP16.15■□□□□ 0.18
USP39-202ENST00000409025 A8MXE2 369 aa16.14■□□□□ 0.17
USP39-202ENST00000409025 H0YL77 283 aa16.14■□□□□ 0.17
USP39-202ENST00000409025 BMP5P22003 454 aa16.14■□□□□ 0.17
USP39-202ENST00000409025 FABP6P51161 128 aa16.14■□□□□ 0.17
USP39-202ENST00000409025 LY6G6FQ5SQ64 297 aa16.14■□□□□ 0.17
USP39-202ENST00000409025 MBNL2Q5VZF2 373 aaKnown RBP16.14■□□□□ 0.17
USP39-202ENST00000409025 NEK7Q8TDX7 302 aa16.14■□□□□ 0.17
USP39-202ENST00000409025 TMEM230Q96A57 120 aa16.14■□□□□ 0.17
USP39-202ENST00000409025 TINAGQ9UJW2 476 aa16.14■□□□□ 0.17
USP39-202ENST00000409025 EEF1E1-BLOC1S5C9J1V9 151 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 M0R1B8 84 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 SNAPC5O75971 98 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 PPP3CBP16298 524 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 PI3P19957 117 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 ZNF154Q13106 437 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 LGALSLQ3ZCW2 172 aaPredicted RBP16.13■□□□□ 0.17
USP39-202ENST00000409025 ZNF660Q6AZW8 331 aaPredicted RBP16.13■□□□□ 0.17
USP39-202ENST00000409025 ALKBH2Q6NS38 261 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 DHRS11Q6UWP2 260 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 TMPRSS13Q9BYE2 586 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 ZNF835Q9Y2P0 537 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 SFT2D2O95562 160 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 GRPP07492 148 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 HLA-GP17693 338 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 GLRA1P23415 457 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 SRSF7Q16629 238 aaKnown RBP eCLIP16.13■□□□□ 0.17
USP39-202ENST00000409025 C1QTNF12Q5T7M4 302 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 SUMF2Q8NBJ7 301 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 CXXC4Q9H2H0 198 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 CLEC4MQ9H2X3 399 aaPredicted RBP16.13■□□□□ 0.17
USP39-202ENST00000409025 ASF1BQ9NVP2 202 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 FZR1Q9UM11 496 aa16.13■□□□□ 0.17
USP39-202ENST00000409025 PRRC2CQ9Y520 2896 aaKnown RBP16.13■□□□□ 0.17
USP39-202ENST00000409025 A0A0G2JNJ9 132 aa16.12■□□□□ 0.17
USP39-202ENST00000409025 CDIPTO14735 213 aa16.12■□□□□ 0.17
USP39-202ENST00000409025 GLAP06280 429 aa16.12■□□□□ 0.17
USP39-202ENST00000409025 RBM39Q14498 530 aaKnown RBP16.12■□□□□ 0.17
USP39-202ENST00000409025 RGS7BPQ6MZT1 257 aaPredicted RBP16.12■□□□□ 0.17
USP39-202ENST00000409025 Q6ZPA2 131 aa16.12■□□□□ 0.17
USP39-202ENST00000409025 Q6ZS49 121 aa16.12■□□□□ 0.17
USP39-202ENST00000409025 KCTD9Q7L273 389 aa16.12■□□□□ 0.17
USP39-202ENST00000409025 MRGPRGQ86SM5 289 aa16.12■□□□□ 0.17
USP39-202ENST00000409025 DHRS9Q9BPW9 319 aa16.12■□□□□ 0.17
USP39-202ENST00000409025 WDR13Q9H1Z4 485 aa16.12■□□□□ 0.17
USP39-202ENST00000409025 IFT22Q9H7X7 185 aa16.12■□□□□ 0.17
USP39-202ENST00000409025 DECR2Q9NUI1 292 aa16.12■□□□□ 0.17
USP39-202ENST00000409025 Q9UFV3 132 aa16.12■□□□□ 0.17
USP39-202ENST00000409025 SPEF1Q9Y4P9 236 aa16.12■□□□□ 0.17
USP39-202ENST00000409025 HSPB6O14558 160 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 MLNRO43193 412 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 TSC22D2O75157 780 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 NAPSAO96009 420 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 PGA5P0DJD9 388 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 ZNF81P51508 661 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 ERVK11-1P61568 191 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 RBPJQ06330 500 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 SPERTQ8NA61 448 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 GTF3AQ92664 365 aaKnown RBP16.11■□□□□ 0.17
USP39-202ENST00000409025 PDCD10Q9BUL8 212 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 RIMS4Q9H426 269 aaPredicted RBP16.11■□□□□ 0.17
USP39-202ENST00000409025 Q9N2K0 584 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 ITGB1BP2Q9UKP3 347 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 PLSCR5A0PG75 271 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 HS3ST1O14792 307 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 DEGS1O15121 323 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 CRYAAP02489 173 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 CTSDP07339 412 aaPredicted RBP16.11■□□□□ 0.17
USP39-202ENST00000409025 GLP1RP43220 463 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 GMFBP60983 142 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 SRSF4Q08170 494 aaKnown RBP16.11■□□□□ 0.17
USP39-202ENST00000409025 FAM27E3Q08E93 113 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 NDUFA5Q16718 116 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 PRR30Q53SZ7 412 aaPredicted RBP16.11■□□□□ 0.17
USP39-202ENST00000409025 CLEC18BQ6UXF7 455 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 NRIP2Q9BQI9 281 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 DPCDQ9BVM2 203 aaPredicted RBP16.11■□□□□ 0.17
USP39-202ENST00000409025 SLC23A1Q9UHI7 598 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 TUBD1Q9UJT1 453 aa16.11■□□□□ 0.17
USP39-202ENST00000409025 MGAQ8IWI9 3026 aa16.1■□□□□ 0.17
USP39-202ENST00000409025 A0A0B4J2A0 478 aa16.1■□□□□ 0.17
USP39-202ENST00000409025 CCSO14618 274 aa16.1■□□□□ 0.17
USP39-202ENST00000409025 NXPH2O95156 264 aa16.1■□□□□ 0.17
USP39-202ENST00000409025 KNG1P01042 644 aa16.1■□□□□ 0.17
USP39-202ENST00000409025 ACAA1P09110 424 aaPredicted RBP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms