RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 CLN8Q9UBY8 286 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 UQCR10Q9UDW1 63 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 TRAV8-7A0A075B6U6 113 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 C2CD4DB7Z1M9 353 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 SFT2D2O95562 160 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 PSG1P11464 419 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 HNRNPA2B1P22626 353 aaKnown RBP8.98□□□□□ -0.97
VPS39-214ENST00000614932 GNRHRP30968 328 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 MPV17LQ2QL34 196 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 TRMT12Q53H54 448 aaKnown RBP8.98□□□□□ -0.97
VPS39-214ENST00000614932 SAMD13Q5VXD3 122 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 SLC22A18ASQ8N1D0 253 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 ZNF417Q8TAU3 575 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 RNF128Q8TEB7 428 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 CMKLR1Q99788 373 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 PRRX2Q99811 253 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 RAB11FIP5Q9BXF6 653 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 PNO1Q9NRX1 252 aaKnown RBP8.98□□□□□ -0.97
VPS39-214ENST00000614932 ZNF581Q9P0T4 197 aa8.98□□□□□ -0.97
VPS39-214ENST00000614932 COLQQ9Y215 455 aaPredicted RBP8.98□□□□□ -0.97
VPS39-214ENST00000614932 A0A0A6YYH2 397 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 A6NJ64 397 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 RCBTB2O95199 551 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 ZIC2O95409 532 aaPredicted RBP8.97□□□□□ -0.97
VPS39-214ENST00000614932 LGALS7P47929 136 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 KHKP50053 298 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 CNN1P51911 297 aaKnown RBP8.97□□□□□ -0.97
VPS39-214ENST00000614932 HNRNPA3P51991 378 aaKnown RBP8.97□□□□□ -0.97
VPS39-214ENST00000614932 SELENOVP59797 346 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 RAC3P60763 192 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 C17orf67Q0P5P2 114 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 FZD2Q14332 565 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 TMEM182Q6ZP80 229 aaPredicted RBP8.97□□□□□ -0.97
VPS39-214ENST00000614932 GDF7Q7Z4P5 450 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 TMEM52Q8NDY8 209 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 OR4B1Q8NGF8 309 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 FAM3CQ92520 227 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 ERGIC1Q969X5 290 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 SH3BGRL3Q9H299 93 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 SIDT1Q9NXL6 827 aaKnown RBP8.97□□□□□ -0.97
VPS39-214ENST00000614932 WSB2Q9NYS7 404 aaPredicted RBP8.97□□□□□ -0.97
VPS39-214ENST00000614932 FLRT3Q9NZU0 649 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 CES1P1Q9UKY3 287 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 WIPI2Q9Y4P8 454 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 WDFY3Q8IZQ1 3526 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 PRR19A6NJB7 356 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 OR5B21A6NL26 309 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 ATXN7O15265 892 aaPredicted RBP8.97□□□□□ -0.97
VPS39-214ENST00000614932 FUT1P19526 365 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 CFPP27918 469 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 ZNF260Q3ZCT1 412 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 ACTL10Q5JWF8 245 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 SPSB3Q6PJ21 355 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 FIGLAQ6QHK4 219 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 CLEC18BQ6UXF7 455 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 TMEM184AQ6ZMB5 413 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 TCF24Q7RTU0 167 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 TMEM156Q8N614 296 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 MARCH1Q8TCQ1 289 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 SLC35A4Q96G79 324 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 OR6C1Q96RD1 312 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 NUDT16L1Q9BRJ7 211 aaKnown RBP8.97□□□□□ -0.97
VPS39-214ENST00000614932 FBXO34Q9NWN3 711 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 HRASLS2Q9NWW9 162 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 FRYLO94915 3013 aa8.97□□□□□ -0.97
VPS39-214ENST00000614932 TRBV5-5A0A0J9YX44 114 aa8.96□□□□□ -0.97
VPS39-214ENST00000614932 B4DGG1 531 aa8.96□□□□□ -0.97
VPS39-214ENST00000614932 PRKNO60260 465 aaPredicted RBP8.96□□□□□ -0.97
VPS39-214ENST00000614932 PFN1P07737 140 aaKnown RBP8.96□□□□□ -0.97
VPS39-214ENST00000614932 TUBG1P23258 451 aa8.96□□□□□ -0.97
VPS39-214ENST00000614932 UBE2NP61088 152 aaKnown RBP8.96□□□□□ -0.97
VPS39-214ENST00000614932 EXOSC7Q15024 291 aaKnown RBP8.96□□□□□ -0.97
VPS39-214ENST00000614932 RAB30Q15771 203 aa8.96□□□□□ -0.97
VPS39-214ENST00000614932 FCRL6Q6DN72 434 aa8.96□□□□□ -0.97
VPS39-214ENST00000614932 IL22RA1Q8N6P7 574 aa8.96□□□□□ -0.97
VPS39-214ENST00000614932 STXBP6Q8NFX7 210 aa8.96□□□□□ -0.97
VPS39-214ENST00000614932 ZNF596Q8TC21 504 aa8.96□□□□□ -0.97
VPS39-214ENST00000614932 ADAMTS15Q8TE58 950 aa8.96□□□□□ -0.97
VPS39-214ENST00000614932 ADIPOR1Q96A54 375 aa8.96□□□□□ -0.97
VPS39-214ENST00000614932 SLC41A2Q96JW4 573 aa8.96□□□□□ -0.97
VPS39-214ENST00000614932 ICAM5Q9UMF0 924 aa8.96□□□□□ -0.97
VPS39-214ENST00000614932 LRP12Q9Y561 859 aa8.96□□□□□ -0.97
VPS39-214ENST00000614932 MAP1LC3B2A6NCE7 125 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 VSTM5A8MXK1 200 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 SLC25A17O43808 307 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 SEMA4FO95754 770 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 THY1P04216 161 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 BLKP51451 505 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 TGM3Q08188 693 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 NSDHLQ15738 373 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 PHF19Q5T6S3 580 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 WDR25Q64LD2 544 aaPredicted RBP8.96□□□□□ -0.98
VPS39-214ENST00000614932 Q6ZN92 141 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 ZNF709Q8N972 641 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 OR10G4Q8NGN3 311 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 OR11L1Q8NGX0 322 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 OR2AJ1Q8NGZ0 328 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 FAM174AQ8TBP5 190 aa8.96□□□□□ -0.98
VPS39-214ENST00000614932 PTPMT1Q8WUK0 201 aaPredicted RBP8.96□□□□□ -0.98
VPS39-214ENST00000614932 CCDC74AQ96AQ1 378 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms