RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 PECRQ9BY49 303 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 MTFP1Q9UDX5 166 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 KIR2DL1P43626 348 aaPredicted RBP16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 GUK1Q16774 197 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 OR2W3Q7Z3T1 314 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 MED30Q96HR3 178 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 M1APQ8TC57 530 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 ZNF586Q9NXT0 402 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 SLC2A8Q9NY64 477 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 PTPMT1Q8WUK0 201 aaPredicted RBP16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 ST8SIA5O15466 376 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 CELA2AP08217 269 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 CSF2RBP32927 897 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 POLR2GP62487 172 aaKnown RBP eCLIP16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 PJVKQ0ZLH3 352 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 GPR27Q9NS67 375 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 MMP24Q9Y5R2 645 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 PAPPAQ13219 1627 aa16.51■□□□□ 0.23
SMARCC1-201ENST00000254480 TBX19O60806 448 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 MMP7P09237 267 aaPredicted RBP16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 CXorf51AA0A1B0GTR3 108 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 HOXC4P09017 264 aaPredicted RBP16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 ZNF260Q3ZCT1 412 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 ETV3LQ6ZN32 361 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 CXXC4Q9H2H0 198 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 MRPS18BQ9Y676 258 aaKnown RBP16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 CD3EP07766 207 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 OR1B1Q8NGR6 318 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 MAP6Q96JE9 813 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 C10orf90Q96M02 699 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 UCK1Q9HA47 277 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 CENPVL1A0A0U1RR11 272 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 RAC3P60763 192 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 SSBP1Q04837 148 aaKnown RBP16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 GAB4Q2WGN9 574 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 A0A1W2PPV9 198 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 LIPT2A6NK58 231 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 MGAT2Q10469 447 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 SKP2Q13309 424 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 GPR137Q96N19 417 aa16.5■□□□□ 0.23
SMARCC1-201ENST00000254480 DNASE2O00115 360 aaPredicted RBP16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 CDX4O14627 284 aaPredicted RBP16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 PEBP1P30086 187 aaKnown RBP16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 FGF9P31371 208 aaPredicted RBP16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 LURAP1Q96LR2 239 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 C1QAP02745 245 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 CHRNA7P36544 502 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 SEZ6L2Q6UXD5 910 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 CRISPLD2Q9H0B8 497 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 BCORQ6W2J9 1755 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 ACTL6AO96019 429 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 MYPOPQ86VE0 399 aaPredicted RBP16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 NAA60Q9H7X0 242 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 TRAPPC4Q9Y296 219 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 OR6X1Q8NH79 312 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 RAB18Q9NP72 206 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 COL18A1P39060 1754 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 IGHV3-21A0A0B4J1V1 117 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 A0A1W2PPE3 182 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 PIGYQ3MUY2 71 aa16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 ATG4DQ86TL0 474 aaPredicted RBP16.49■□□□□ 0.23
SMARCC1-201ENST00000254480 RNF224P0DH78 156 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 SUMO1P63165 101 aaKnown RBP16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 Q1RN00 199 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 RNASEKQ6P5S7 137 aaKnown RBP16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 ZDHHC22Q8N966 263 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 TMEM208Q9BTX3 173 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 TRAPPC1Q9Y5R8 145 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 hADV38S2A0JD32 116 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 CD300CQ08708 224 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 TIPARPQ7Z3E1 657 aaKnown RBP16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 TBC1D26Q86UD7 250 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 OR4F17Q8NGA8 305 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 TRIP12Q14669 1992 aaPredicted RBP16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 SMRP1Q8NCR6 262 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 COA4Q9NYJ1 87 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 APOBEC4Q8WW27 367 aaKnown RBP16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 RAB1BQ9H0U4 201 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 A0A1B0GTQ1 180 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 PHOX2AO14813 284 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 COLQQ9Y215 455 aaPredicted RBP16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 TMED3Q9Y3Q3 217 aa16.48■□□□□ 0.23
SMARCC1-201ENST00000254480 TMPRSS5Q9H3S3 457 aa16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 DOCK5Q9H7D0 1870 aa16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 K7ESF4 209 aa16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 ZBTB37Q5TC79 503 aa16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 WDR74Q6RFH5 385 aaPredicted RBP16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 C9orf40Q8IXQ3 194 aa16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 TCTE3Q8IZS6 198 aa16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 D2HGDHQ8N465 521 aa16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 RND1Q92730 232 aa16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 RBM14Q96PK6 669 aaKnown RBP16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 OR2M7Q8NG81 312 aa16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 MAP1LC3B2A6NCE7 125 aa16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 HMGA2P52926 109 aa16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 PRRX1P54821 245 aa16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 ZNF788Q6ZQV5 615 aa16.47■□□□□ 0.23
SMARCC1-201ENST00000254480 MAP1LC3BQ9GZQ8 125 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms