RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 COL10A1Q03692 680 aa15.53■□□□□ 0.08
CCDC28A-203ENST00000617445 SRSF4Q08170 494 aaKnown RBP15.53■□□□□ 0.08
CCDC28A-203ENST00000617445 LRRC75BQ2VPJ9 315 aa15.53■□□□□ 0.08
CCDC28A-203ENST00000617445 TP53I3Q53FA7 332 aa15.53■□□□□ 0.08
CCDC28A-203ENST00000617445 UTS2BQ765I0 119 aa15.53■□□□□ 0.08
CCDC28A-203ENST00000617445 OR4M1Q8NGD0 313 aa15.53■□□□□ 0.08
CCDC28A-203ENST00000617445 RNFT2Q96EX2 444 aa15.53■□□□□ 0.08
CCDC28A-203ENST00000617445 SNX22Q96L94 193 aa15.53■□□□□ 0.08
CCDC28A-203ENST00000617445 IGKV1-27A0A075B6S5 117 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 DAPL1A0PJW8 107 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 C17orf98A8MV24 154 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 E9PQ18 207 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 H3BUX3 64 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 EI24O14681 340 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 SLC16A6O15403 523 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 ZNF737O75373 536 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 KIR3DL2P43630 455 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 CCR9P51686 369 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 MEF2CQ06413 473 aaPredicted RBP15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 C11orf88Q6PI97 169 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 LIAT1Q6ZQX7 453 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 SLC25A26Q70HW3 274 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 GDPD3Q7L5L3 318 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 ACBD7Q8N6N7 88 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 ASCC1Q8N9N2 400 aaKnown RBP15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 UBE2FQ969M7 185 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 AJUBAQ96IF1 538 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 TCF7L1Q9HCS4 588 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 FBLN5Q9UBX5 448 aa15.52■□□□□ 0.08
CCDC28A-203ENST00000617445 H3BNX3 289 aa15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 MPZL2O60487 215 aa15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 ZNF728P0DKX0 622 aa15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 ACTA2P62736 377 aa15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 ACTG2P63267 376 aa15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 KPNB1Q14974 876 aaKnown RBP15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 RDH10Q8IZV5 341 aa15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 OR8H2Q8N162 312 aa15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 SLAMF9Q96A28 289 aa15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 RNF166Q96A37 237 aaPredicted RBP15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 SPSB1Q96BD6 273 aa15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 PPA2Q9H2U2 334 aa15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 FRRS1LQ9P0K9 344 aa15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 GLS2Q9UI32 602 aa15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 EXOGQ9Y2C4 368 aaKnown RBP15.51■□□□□ 0.07
CCDC28A-203ENST00000617445 H3BSH0 61 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 WIPF1O43516 503 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 HTR1AP08908 422 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 CCL3L1P16619 93 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 ZNF20P17024 532 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 ATF1P18846 271 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 DLX6P56179 175 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 MTCP1P56278 107 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 KRTAP10-3P60369 221 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 ZNF273Q14593 569 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 ASPHD2Q6ICH7 369 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 SLC35E4Q6ICL7 350 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 LHFPL2Q6ZUX7 228 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 BATF2Q8N1L9 274 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 OR13D1Q8NGV5 346 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 C17orf50Q8WW18 174 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 EMG1Q92979 244 aaKnown RBP15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 ADAT3Q96EY9 351 aaPredicted RBP15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 Q96MT0 163 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 MBOAT4Q96T53 435 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 CDCA4Q9BXL8 241 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 MMP27Q9H306 513 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 RANBP3Q9H6Z4 567 aaPredicted RBP15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 NEK6Q9HC98 313 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 HHLA2Q9UM44 414 aa15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 TBL2Q9Y4P3 447 aaKnown RBP15.5■□□□□ 0.07
CCDC28A-203ENST00000617445 VWFP04275 2813 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 NOTCH1P46531 2555 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 TRBV2A0A0J9YWF9 115 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 hADV38S2A0JD32 116 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 FAM90A8PA6NJQ4 464 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 VGLL3A8MV65 326 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 F8VVB4 439 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 F8VWA3 439 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 PEX2P28328 305 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 GABRA5P31644 462 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 KIR2DS4P43632 304 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 EDDM3BP56851 147 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 OR12D2P58182 307 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 ZNF146Q15072 292 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 ZIK1Q3SY52 487 aaPredicted RBP15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 SPIN3Q5JUX0 258 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 CBR4Q8N4T8 237 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 PPP1R35Q8TAP8 253 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 FGGYQ96C11 551 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 FOXRED1Q96CU9 486 aaPredicted RBP15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 C9orf16Q9BUW7 83 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 RHOFQ9HBH0 211 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 GMPPBQ9Y5P6 360 aa15.49■□□□□ 0.07
CCDC28A-203ENST00000617445 IGKV1-9A0A0C4DH69 117 aa15.48■□□□□ 0.07
CCDC28A-203ENST00000617445 HAND1O96004 215 aa15.48■□□□□ 0.07
CCDC28A-203ENST00000617445 MT-ND2P03891 347 aa15.48■□□□□ 0.07
CCDC28A-203ENST00000617445 OCM2P0CE71 109 aa15.48■□□□□ 0.07
CCDC28A-203ENST00000617445 OCMP0CE72 109 aaPredicted RBP15.48■□□□□ 0.07
CCDC28A-203ENST00000617445 PIPP12273 146 aaPredicted RBP15.48■□□□□ 0.07
CCDC28A-203ENST00000617445 COX7A1P24310 79 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 141.1 ms