RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 FKBP2P26885 142 aaKnown RBP15.29■□□□□ 0.04
SYNE3-202ENST00000553340 RSPO1Q2MKA7 263 aaPredicted RBP15.29■□□□□ 0.04
SYNE3-202ENST00000553340 FAM213BQ8TBF2 198 aa15.29■□□□□ 0.04
SYNE3-202ENST00000553340 SYT3Q9BQG1 590 aa15.29■□□□□ 0.04
SYNE3-202ENST00000553340 TMPRSS5Q9H3S3 457 aa15.29■□□□□ 0.04
SYNE3-202ENST00000553340 SMDT1Q9H4I9 107 aa15.29■□□□□ 0.04
SYNE3-202ENST00000553340 ZDHHC8Q9ULC8 765 aa15.29■□□□□ 0.04
SYNE3-202ENST00000553340 ANGPTL7O43827 346 aa15.29■□□□□ 0.04
SYNE3-202ENST00000553340 PIAS2O75928 621 aa15.29■□□□□ 0.04
SYNE3-202ENST00000553340 ZNF205O95201 554 aa15.29■□□□□ 0.04
SYNE3-202ENST00000553340 OTX1P32242 354 aaPredicted RBP15.29■□□□□ 0.04
SYNE3-202ENST00000553340 NXPH1P58417 271 aa15.29■□□□□ 0.04
SYNE3-202ENST00000553340 NKAIN1Q4KMZ8 207 aa15.29■□□□□ 0.04
SYNE3-202ENST00000553340 SOHLH1Q5JUK2 328 aa15.29■□□□□ 0.04
SYNE3-202ENST00000553340 C10orf128Q5T292 105 aa15.29■□□□□ 0.04
SYNE3-202ENST00000553340 TMEM182Q6ZP80 229 aaPredicted RBP15.29■□□□□ 0.04
SYNE3-202ENST00000553340 C1QL4Q86Z23 238 aa15.29■□□□□ 0.04
SYNE3-202ENST00000553340 OR5L1Q8NGL2 311 aa15.29■□□□□ 0.04
SYNE3-202ENST00000553340 WDR77Q9BQA1 342 aaPredicted RBP15.29■□□□□ 0.04
SYNE3-202ENST00000553340 RTTNQ86VV8 2226 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 A0A1B0GV50 99 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 GLI4P10075 376 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 GLB1P16278 677 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 MAS1LP35410 378 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 PPP1CCP36873 323 aaKnown RBP15.28■□□□□ 0.04
SYNE3-202ENST00000553340 GNMTQ14749 295 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 IGSF11Q5DX21 431 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 RABEPKQ7Z6M1 372 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 SUMF2Q8NBJ7 301 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 SPTSSAQ969W0 71 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 SPSB1Q96BD6 273 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 MSI2Q96DH6 328 aaKnown RBP15.28■□□□□ 0.04
SYNE3-202ENST00000553340 REEP6Q96HR9 211 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 ANGPTL4Q9BY76 406 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 RCL1Q9Y2P8 373 aaKnown RBP15.28■□□□□ 0.04
SYNE3-202ENST00000553340 MED19A0JLT2 244 aaPredicted RBP15.28■□□□□ 0.04
SYNE3-202ENST00000553340 OR2C1O95371 312 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 DBHP09172 617 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 PHYHD1Q5SRE7 291 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 PLEK2Q9NYT0 353 aa15.28■□□□□ 0.04
SYNE3-202ENST00000553340 PUS1Q9Y606 427 aaKnown RBP eCLIP15.28■□□□□ 0.04
SYNE3-202ENST00000553340 SPRY1O43609 319 aaPredicted RBP15.27■□□□□ 0.04
SYNE3-202ENST00000553340 IGHV2-70P01814 119 aa15.27■□□□□ 0.04
SYNE3-202ENST00000553340 MYF5P13349 255 aa15.27■□□□□ 0.04
SYNE3-202ENST00000553340 HIST1H3AP68431 136 aa15.27■□□□□ 0.04
SYNE3-202ENST00000553340 HIST2H3PS2Q5TEC6 136 aa15.27■□□□□ 0.04
SYNE3-202ENST00000553340 NTNG2Q96CW9 530 aa15.27■□□□□ 0.04
SYNE3-202ENST00000553340 FAM230AA0A1W2PPH8 454 aa15.27■□□□□ 0.03
SYNE3-202ENST00000553340 K7N7A8 449 aa15.27■□□□□ 0.03
SYNE3-202ENST00000553340 RPS23P62266 143 aaKnown RBP15.27■□□□□ 0.03
SYNE3-202ENST00000553340 WDSUB1Q8N9V3 476 aa15.27■□□□□ 0.03
SYNE3-202ENST00000553340 TMEM54Q969K7 222 aa15.27■□□□□ 0.03
SYNE3-202ENST00000553340 NABP1Q96AH0 204 aa15.27■□□□□ 0.03
SYNE3-202ENST00000553340 SGK3Q96BR1 496 aa15.27■□□□□ 0.03
SYNE3-202ENST00000553340 RBM24Q9BX46 236 aaKnown RBP15.27■□□□□ 0.03
SYNE3-202ENST00000553340 TMED3Q9Y3Q3 217 aa15.27■□□□□ 0.03
SYNE3-202ENST00000553340 CCDC187A0A096LP49 1063 aa15.26■□□□□ 0.03
SYNE3-202ENST00000553340 AFF3P51826 1226 aaKnown RBP15.26■□□□□ 0.03
SYNE3-202ENST00000553340 SHBQ15464 509 aa15.26■□□□□ 0.03
SYNE3-202ENST00000553340 RSPO4Q2I0M5 234 aaPredicted RBP15.26■□□□□ 0.03
SYNE3-202ENST00000553340 SNAI3Q3KNW1 292 aa15.26■□□□□ 0.03
SYNE3-202ENST00000553340 ACER2Q5QJU3 275 aa15.26■□□□□ 0.03
SYNE3-202ENST00000553340 WDR74Q6RFH5 385 aaPredicted RBP15.26■□□□□ 0.03
SYNE3-202ENST00000553340 SLC22A25Q6T423 547 aa15.26■□□□□ 0.03
SYNE3-202ENST00000553340 FOXL2NBQ6ZUU3 175 aa15.26■□□□□ 0.03
SYNE3-202ENST00000553340 CPEB2Q7Z5Q1 589 aaKnown RBP15.26■□□□□ 0.03
SYNE3-202ENST00000553340 MARS2Q96GW9 593 aaKnown RBP15.26■□□□□ 0.03
SYNE3-202ENST00000553340 ZNF581Q9P0T4 197 aa15.26■□□□□ 0.03
SYNE3-202ENST00000553340 TINAGQ9UJW2 476 aa15.26■□□□□ 0.03
SYNE3-202ENST00000553340 MED12Q93074 2177 aa15.26■□□□□ 0.03
SYNE3-202ENST00000553340 C2CD4DB7Z1M9 353 aa15.26■□□□□ 0.03
SYNE3-202ENST00000553340 PHF1O43189 567 aaPredicted RBP15.26■□□□□ 0.03
SYNE3-202ENST00000553340 DHHO43323 396 aa15.26■□□□□ 0.03
SYNE3-202ENST00000553340 EWSR1Q01844 656 aaKnown RBP eCLIP15.26■□□□□ 0.03
SYNE3-202ENST00000553340 NCMAPQ5T1S8 102 aa15.26■□□□□ 0.03
SYNE3-202ENST00000553340 HEPN1Q6WQI6 88 aa15.26■□□□□ 0.03
SYNE3-202ENST00000553340 CCDC71LQ8N9Z2 235 aa15.26■□□□□ 0.03
SYNE3-202ENST00000553340 SPACA9Q96E40 222 aaPredicted RBP15.26■□□□□ 0.03
SYNE3-202ENST00000553340 UNKLQ9H9P5 680 aaKnown RBP15.26■□□□□ 0.03
SYNE3-202ENST00000553340 SPTBN5Q9NRC6 3674 aaKnown RBP15.26■□□□□ 0.03
SYNE3-202ENST00000553340 PPIHO43447 177 aaKnown RBP15.25■□□□□ 0.03
SYNE3-202ENST00000553340 RAB2AP61019 212 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 ZNF266Q14584 549 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 CNN3Q15417 329 aaKnown RBP15.25■□□□□ 0.03
SYNE3-202ENST00000553340 FADS6Q8N9I5 356 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 EDARADDQ8WWZ3 215 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 BOD1Q96IK1 185 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 RARRES2Q99969 163 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 SPAG17Q6Q759 2223 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 LTBRP36941 435 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 UCP3P55916 312 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 H3F3AP84243 136 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 C20orf196Q8IYI0 205 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 OR4D5Q8NGN0 318 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 OR11L1Q8NGX0 322 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 DYRK2Q92630 601 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 MOB3AQ96BX8 217 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 YPEL4Q96NS1 127 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 ZNF286AQ9HBT8 521 aa15.25■□□□□ 0.03
SYNE3-202ENST00000553340 MTCH2Q9Y6C9 303 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms