RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 GCNT2Q8N0V5 402 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 SLAMF9Q96A28 289 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 WBP1Q96G27 269 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 LIME1Q9H400 295 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 TNFSF18Q9UNG2 199 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 SHANK1Q9Y566 2161 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 OR5H8P0DN80 308 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 RBM11P57052 281 aaKnown RBP14.06□□□□□ -0.16
COL4A1-204ENST00000543140 ZNF660Q6AZW8 331 aaPredicted RBP14.06□□□□□ -0.16
COL4A1-204ENST00000543140 HPSE2Q8WWQ2 592 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 TECTBQ96PL2 329 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 FAM86C1Q9NVL1 165 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 IL36GQ9NZH8 169 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 MBD2Q9UBB5 411 aa14.06□□□□□ -0.16
COL4A1-204ENST00000543140 A0A1W2PR80 420 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 F8VVB4 439 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 F8VWA3 439 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 LILRA1O75019 489 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 COX5BP10606 129 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 BCL3P20749 454 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 TMEM65Q6PI78 240 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 P4HA3Q7Z4N8 544 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 OR1K1Q8NGR3 316 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 THAP6Q8TBB0 222 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 HS3ST6Q96QI5 342 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 VRK1Q99986 396 aaPredicted RBP14.05□□□□□ -0.16
COL4A1-204ENST00000543140 WDR13Q9H1Z4 485 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 AUP1Q9Y679 476 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 PQLC2LA1A4F0 135 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 WNT5AP41221 380 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 MDP1Q86V88 176 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 OR6K3Q8NGY3 331 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 MRPS24Q96EL2 167 aaKnown RBP14.05□□□□□ -0.16
COL4A1-204ENST00000543140 MARS2Q96GW9 593 aaKnown RBP14.05□□□□□ -0.16
COL4A1-204ENST00000543140 ZNF442Q9H7R0 627 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 CHMP1AQ9HD42 196 aaPredicted RBP14.05□□□□□ -0.16
COL4A1-204ENST00000543140 C14orf166Q9Y224 244 aaKnown RBP14.05□□□□□ -0.16
COL4A1-204ENST00000543140 PTPRBP23467 1997 aa14.05□□□□□ -0.16
COL4A1-204ENST00000543140 DSPP15924 2871 aaKnown RBP14.04□□□□□ -0.16
COL4A1-204ENST00000543140 ZNF732B4DXR9 585 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 TEX46H3BTG2 121 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 RLN2P04090 185 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 SLC25A4P12235 298 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 RPS2P15880 293 aaKnown RBP14.04□□□□□ -0.16
COL4A1-204ENST00000543140 APLNRP35414 380 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 DAZAP2Q15038 168 aaPredicted RBP14.04□□□□□ -0.16
COL4A1-204ENST00000543140 SPATA46Q5T0L3 261 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 ZDHHC23Q8IYP9 409 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 TOMM40LQ969M1 308 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 METTL8Q9H825 291 aaKnown RBP14.04□□□□□ -0.16
COL4A1-204ENST00000543140 RNF222A6NCQ9 220 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 PDCD6O75340 191 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 B3GALNT1O75752 331 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 SCO1O75880 301 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 CRHP06850 196 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 IL32P24001 234 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 TOR2AQ5JU69 321 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 SLC22A25Q6T423 547 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 SCARB1Q8WTV0 552 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 BCL2L2Q92843 193 aaPredicted RBP14.04□□□□□ -0.16
COL4A1-204ENST00000543140 CXorf58Q96LI9 332 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 C1QTNF6Q9BXI9 259 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 IL36RNQ9UBH0 155 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 EDARQ9UNE0 448 aa14.04□□□□□ -0.16
COL4A1-204ENST00000543140 BOD1L1Q8NFC6 3051 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 A0A0D9SG52 128 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 CD300LBA8K4G0 201 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 C3orf80F5H4A9 247 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 I3L521 148 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 HOXB5P09067 269 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 RRASP10301 218 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 PSMB6P28072 239 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 PTGER4P35408 488 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 CEACAM21Q3KPI0 293 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 SLC51BQ86UW2 128 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 PCDHB16Q9NRJ7 776 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 RRP8O43159 456 aaKnown RBP14.03□□□□□ -0.16
COL4A1-204ENST00000543140 SS18L1O75177 396 aaPredicted RBP14.03□□□□□ -0.16
COL4A1-204ENST00000543140 NMBP08949 121 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 FUT3P21217 361 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 DTYMKP23919 212 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 FXYD4P59646 89 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 IGFBP7Q16270 282 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 Q6ZPA2 131 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 KCNRGQ8N5I3 272 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 OR10C1Q96KK4 312 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 DMRTA2Q96SC8 542 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 NECAP2Q9NVZ3 263 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 COQ3Q9NZJ6 369 aa14.03□□□□□ -0.16
COL4A1-204ENST00000543140 PRR14LQ5THK1 2151 aa14.02□□□□□ -0.16
COL4A1-204ENST00000543140 KANTRA0A1W2PQU2 76 aa14.02□□□□□ -0.16
COL4A1-204ENST00000543140 CELA3BP08861 270 aa14.02□□□□□ -0.16
COL4A1-204ENST00000543140 DUSP1P28562 367 aa14.02□□□□□ -0.16
COL4A1-204ENST00000543140 SURF2Q15527 256 aaPredicted RBP14.02□□□□□ -0.16
COL4A1-204ENST00000543140 DEFB109BQ30KR1 87 aa14.02□□□□□ -0.16
COL4A1-204ENST00000543140 ACOT7LQ6ZUV0 252 aa14.02□□□□□ -0.16
COL4A1-204ENST00000543140 MYPOPQ86VE0 399 aaPredicted RBP14.02□□□□□ -0.16
COL4A1-204ENST00000543140 RELL2Q8NC24 303 aaPredicted RBP14.02□□□□□ -0.16
COL4A1-204ENST00000543140 SLC30A7Q8NEW0 376 aa14.02□□□□□ -0.16
COL4A1-204ENST00000543140 OR5M9Q8NGP3 310 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms