RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 GAPDHP04406 335 aaKnown RBP9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 HEXAP06865 529 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 SP1P08047 785 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 ZNF84P51523 738 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 SUPT4H1P63272 117 aaKnown RBP9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 SMCO1Q147U7 214 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 SLC9A3R2Q15599 337 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 AADACL3Q5VUY0 350 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 FOXL2NBQ6ZUU3 175 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 PUSL1Q8N0Z8 303 aaKnown RBP9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 MDS2Q8NDY4 140 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 OR13G1Q8NGZ3 307 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 CPNE4Q96A23 557 aaPredicted RBP9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 FBXO17Q96EF6 278 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 RRNAD1Q96FB5 475 aaKnown RBP9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 PECRQ9BY49 303 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 SLC5A7Q9GZV3 580 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 UQCC1Q9NVA1 299 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 EHFQ9NZC4 300 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 MLXQ9UH92 298 aa9.59□□□□□ -0.87
SH3RF1-203ENST00000508685 ATMQ13315 3056 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 DSPP15924 2871 aaKnown RBP9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 DHRS7CA6NNS2 312 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 NME2P1O60361 137 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 RAD51DO75771 328 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 CST4P01036 141 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 IFNA21P01568 189 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 WT1P19544 449 aaPredicted RBP9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 PVALBP20472 110 aaPredicted RBP9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 NME2P22392 152 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 BLVRBP30043 206 aaPredicted RBP9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 RBMXP38159 391 aaKnown RBP9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 MEOX1P50221 254 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 CAV2P51636 162 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 CLDN18P56856 261 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 PLGLB1Q02325 96 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 AAED1Q7RTV5 226 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 TMPRSS7Q7RTY8 843 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 SGPP2Q8IWX5 399 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 SKA3Q8IX90 412 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 TMED6Q8WW62 240 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 HAS2Q92819 552 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 ST6GALNAC5Q9BVH7 336 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 TREM1Q9NP99 234 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 IGKV1-9A0A0C4DH69 117 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 F5H5K5 113 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 CYTIPO60759 359 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 JTBO76095 146 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 IGHV3-9P01782 118 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 CTSDP07339 412 aaPredicted RBP9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 DBHP09172 617 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 B4GALT1P15291 398 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 CD82P27701 267 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 HOXA1P49639 335 aaPredicted RBP9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 HIST1H3AP68431 136 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 HMGN3Q15651 99 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 C3AR1Q16581 482 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 ANKRD55Q3KP44 614 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 HIST2H3PS2Q5TEC6 136 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 HIST2H3AQ71DI3 136 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 LDLRAD3Q86YD5 345 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 LINC00518Q8N0U6 118 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 SPACA5Q96QH8 159 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 CNTNAP3Q9BZ76 1288 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 CHST5Q9GZS9 411 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 DECR2Q9NUI1 292 aa9.58□□□□□ -0.88
SH3RF1-203ENST00000508685 ADAP1O75689 374 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 ACTL6AO96019 429 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 RPS2P15880 293 aaKnown RBP9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 ZNF708P17019 499 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 RAB32Q13637 225 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 RSPO1Q2MKA7 263 aaPredicted RBP9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 COMMD1Q8N668 190 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 SPTSSAQ969W0 71 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 MICU1Q9BPX6 476 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 PLEKHA2Q9HB19 425 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 RHOFQ9HBH0 211 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 TAF9BQ9HBM6 251 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 PARP11Q9NR21 331 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 PLEK2Q9NYT0 353 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 TUBD1Q9UJT1 453 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 WASF3Q9UPY6 502 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 KCNIP3Q9Y2W7 256 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 KLF13Q9Y2Y9 288 aaPredicted RBP9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 LIPGQ9Y5X9 500 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 CHD8Q9HCK8 2581 aa9.57□□□□□ -0.88
SH3RF1-203ENST00000508685 GPR31O00270 319 aa9.56□□□□□ -0.88
SH3RF1-203ENST00000508685 PATE4P0C8F1 98 aa9.56□□□□□ -0.88
SH3RF1-203ENST00000508685 PRKACAP17612 351 aa9.56□□□□□ -0.88
SH3RF1-203ENST00000508685 GLRA1P23415 457 aa9.56□□□□□ -0.88
SH3RF1-203ENST00000508685 OTX1P32242 354 aaPredicted RBP9.56□□□□□ -0.88
SH3RF1-203ENST00000508685 SULT1A2P50226 295 aa9.56□□□□□ -0.88
SH3RF1-203ENST00000508685 ARG2P78540 354 aa9.56□□□□□ -0.88
SH3RF1-203ENST00000508685 MRPS34P82930 218 aaKnown RBP9.56□□□□□ -0.88
SH3RF1-203ENST00000508685 MST1LQ2TV78 715 aa9.56□□□□□ -0.88
SH3RF1-203ENST00000508685 HFEQ30201 348 aa9.56□□□□□ -0.88
SH3RF1-203ENST00000508685 DMRTC1Q5HYR2 192 aa9.56□□□□□ -0.88
SH3RF1-203ENST00000508685 FAM27BQ5VT28 67 aa9.56□□□□□ -0.88
SH3RF1-203ENST00000508685 RNF144BQ7Z419 303 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms