RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SRSF10O75494 262 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 MPIG6BO95866 241 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 NUDT3O95989 172 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 KRT8P05787 483 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 MELTFP08582 738 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 ACAA1P09110 424 aaPredicted RBP5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 OR2T7P0C7T2 308 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 SELLP14151 372 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 NDUFB7P17568 137 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 AMY2BP19961 511 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 HTR1FP30939 366 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 ATP6V1E1P36543 226 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 GABRA2P47869 451 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 CAV3P56539 151 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 CDC42P60953 191 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 RPL15P61313 204 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 BLMHQ13867 455 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 DGUOKQ16854 277 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 SMIM21Q3B7S5 101 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 CLVS2Q5SYC1 327 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 TMEM42Q69YG0 159 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 HAGHLQ6PII5 290 aaPredicted RBP5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 METAP1DQ6UB28 335 aaPredicted RBP5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 ZNF788Q6ZQV5 615 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 ZNF573Q86YE8 665 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 ELMOD2Q8IZ81 293 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 YIPF7Q8N8F6 280 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 OR8J1Q8NGP2 316 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 OR2T27Q8NH04 317 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 TBC1D15Q8TC07 691 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 NPRL2Q8WTW4 380 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 SSMEM1Q8WWF3 244 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 AQP3Q92482 292 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 RFKQ969G6 155 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 CLUHP3Q96NS8 147 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 TBX5Q99593 518 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 RBM4BQ9BQ04 359 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 OSBPL10Q9BXB5 764 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 RIBC2Q9H4K1 309 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 UNKLQ9H9P5 680 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 TNFRSF19Q9NS68 423 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 MRM2Q9UI43 246 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 RABL2BQ9UNT1 228 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 POLDIP2Q9Y2S7 368 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 CAB39Q9Y376 341 aaPredicted RBP5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 FAM96BQ9Y3D0 163 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 ORC6Q9Y5N6 252 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 V9GYS6 101 aa5.58□□□□□ -1.52
CCDC88A-213ENST00000476903 IGKV1D-17A0A075B6S4 117 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 A0A0U1RQK1 487 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 A0A1B0GUS0 222 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 PQLC2LA1A4F0 135 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 METTL15A6NJ78 407 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 SAC3D1A6NKF1 404 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 J3QT63 122 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 M0R1W7 72 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 MAGEB4O15481 346 aaPredicted RBP5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 SPRY1O43609 319 aaPredicted RBP5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 SULT1C4O75897 302 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 RPP14O95059 124 aaKnown RBP5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 TFF1P04155 84 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 PSG2P11465 335 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 CCL1P22362 96 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 EEF1B2P24534 225 aaKnown RBP5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 POLR2IP36954 125 aaKnown RBP5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 IER3P46695 156 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 HAAOP46952 286 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 DMRTC1Q5HYR2 192 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 NCR3LG1Q68D85 454 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 ZFP1Q6P2D0 407 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 FIP1L1Q6UN15 594 aaKnown RBP5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 ACP7Q6ZNF0 438 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 PLEKHG7Q6ZR37 379 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 C1orf122Q6ZSJ8 110 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 Q6ZSR3 168 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 ASRGL1Q7L266 308 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 SSX6Q7RTT6 188 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 PDZD9Q8IXQ8 264 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 ZNF561Q8N587 486 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 POC1AQ8NBT0 407 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 ZNRF1Q8ND25 227 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 CCDC54Q8NEL0 328 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 TMEM185AQ8NFB2 350 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 OR10H4Q8NGA5 316 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 OR4F5Q8NH21 305 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 C17orf50Q8WW18 174 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 PYDC1Q8WXC3 89 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 DYRK2Q92630 601 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 CHIAQ9BZP6 476 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 DPAGT1Q9H3H5 408 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 METTL8Q9H825 291 aaKnown RBP5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 PLEKHA1Q9HB21 404 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 SIRT7Q9NRC8 400 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 GPR173Q9NS66 373 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 IMPAD1Q9NX62 359 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 ZNF222Q9UK12 451 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 SLC22A13Q9Y226 551 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 MMP24Q9Y5R2 645 aa5.57□□□□□ -1.52
CCDC88A-213ENST00000476903 NBEAL1Q6ZS30 2694 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms