RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 DSCAML1Q8TD84 2053 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 FAM90A8PA6NJQ4 464 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 F8VVB4 439 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 F8VWA3 439 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 SERPINA3P01011 423 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 RBP4P02753 201 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 CSF1P09603 554 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 ZNF728P0DKX0 622 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 ISL1P61371 349 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 Q6ZTK2 550 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 PRSS35Q8N3Z0 413 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 DTX3Q8N9I9 347 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 OR2T6Q8NHC8 308 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 FAM110DQ8TAY7 271 aaPredicted RBP13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 PIFOQ8TCI5 191 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 RFKQ969G6 155 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 SLAMF9Q96A28 289 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 BORCS8Q96FH0 119 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 OSBPL10Q9BXB5 764 aa13.43□□□□□ -0.26
CCDC28B-204ENST00000469003 LOC107986453A0A1B0GWG9 222 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 VGLL3A8MV65 326 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 CHST1O43916 411 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 UBCP0CG48 685 aaKnown RBP13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 EDDM3BP56851 147 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 CDC42P60953 191 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 ZNF85Q03923 595 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 CNN3Q15417 329 aaKnown RBP13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 SLC25A26Q70HW3 274 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 GDPD3Q7L5L3 318 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 FAM220AQ7Z4H9 259 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 LHFPL4Q7Z7J7 247 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 OR8H2Q8N162 312 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 OR13D1Q8NGV5 346 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 PP6455Q8WZ26 134 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 FOXRED1Q96CU9 486 aaPredicted RBP13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 SNX22Q96L94 193 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 NPFFR1Q9GZQ6 430 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 SEBOXQ9HB31 216 aaPredicted RBP13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 GNG8Q9UK08 70 aa13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 TBL2Q9Y4P3 447 aaKnown RBP13.42□□□□□ -0.26
CCDC28B-204ENST00000469003 MEGF11A6BM72 1044 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 ODF3BA8MYP8 253 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 ARG1P05089 322 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 KIR3DL2P43630 455 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 MEF2CQ06413 473 aaPredicted RBP13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 TP53I3Q53FA7 332 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 ZNF626Q68DY1 528 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 EGFL6Q8IUX8 553 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 Q8IYB0 196 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 DYNAPQ8N1N2 210 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 DNAAF1Q8NEP3 725 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 OR11H6Q8NGC7 330 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 CFHR4Q92496 578 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 EMG1Q92979 244 aaKnown RBP13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 MALSU1Q96EH3 234 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 CDCA4Q9BXL8 241 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 FOXJ3Q9UPW0 622 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 ZNF281Q9Y2X9 895 aa13.41□□□□□ -0.26
CCDC28B-204ENST00000469003 TMEM82A0PJX8 343 aa13.4□□□□□ -0.26
CCDC28B-204ENST00000469003 SAC3D1A6NKF1 404 aa13.4□□□□□ -0.26
CCDC28B-204ENST00000469003 INMTO95050 263 aa13.4□□□□□ -0.26
CCDC28B-204ENST00000469003 IGHV1-8P0DP01 117 aa13.4□□□□□ -0.26
CCDC28B-204ENST00000469003 RBP2P50120 134 aa13.4□□□□□ -0.26
CCDC28B-204ENST00000469003 ATP1B3P54709 279 aa13.4□□□□□ -0.26
CCDC28B-204ENST00000469003 TMEM244Q5VVB8 128 aa13.4□□□□□ -0.26
CCDC28B-204ENST00000469003 TCF23Q7RTU1 214 aa13.4□□□□□ -0.26
CCDC28B-204ENST00000469003 ENTHD1Q8IYW4 607 aa13.4□□□□□ -0.26
CCDC28B-204ENST00000469003 RDH10Q8IZV5 341 aa13.4□□□□□ -0.26
CCDC28B-204ENST00000469003 KLHDC1Q8N7A1 406 aa13.4□□□□□ -0.26
CCDC28B-204ENST00000469003 TRUB1Q8WWH5 349 aaKnown RBP13.4□□□□□ -0.26
CCDC28B-204ENST00000469003 RNF166Q96A37 237 aaPredicted RBP13.4□□□□□ -0.26
CCDC28B-204ENST00000469003 ZNF714Q96N38 554 aa13.4□□□□□ -0.26
CCDC28B-204ENST00000469003 TRBV2A0A0J9YWF9 115 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 hADV38S2A0JD32 116 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 MEX3AA1L020 520 aaKnown RBP13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 CIB2O75838 187 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 HAND1O96004 215 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 CYB5AP00167 134 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 PEX2P28328 305 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 ACTC1P68032 377 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 ACTA1P68133 377 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 ZNF91Q05481 1191 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 EDDM3AQ14507 147 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 FAM189A2Q15884 450 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 PLA1AQ53H76 456 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 HIST2H2BDQ6DRA6 164 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 UTS2BQ765I0 119 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 KCTD20Q7Z5Y7 419 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 OR2G2Q8NGZ5 317 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 RPS4Y2Q8TD47 263 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 ADAT3Q96EY9 351 aaPredicted RBP13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 NKX3-1Q99801 234 aaPredicted RBP13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 ABCB10Q9NRK6 738 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 IMPAD1Q9NX62 359 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 IL36RNQ9UBH0 155 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 TCF19Q9Y242 345 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 LINC00312Q9Y6C7 94 aa13.39□□□□□ -0.27
CCDC28B-204ENST00000469003 IGKV1-9A0A0C4DH69 117 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 A6NDX4 124 aa13.38□□□□□ -0.27
CCDC28B-204ENST00000469003 IGHA1P01876 353 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms