RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 SLC2A9Q9NRM0 540 aa16.62■□□□□ 0.25
RTN4-201ENST00000317610 BRWD1Q9NSI6 2320 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 NSG1A0A0A6YYJ2 146 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 hCG_1809904A0A1W2PP81 198 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 A0A1W2PR64 198 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 A0A1W2PRV1 198 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 K7N7A8 449 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 ST8SIA3O43173 380 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 OR8U8P0C7N1 319 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 OPRM1P35372 400 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 UCP3P55916 312 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 RSU1Q15404 277 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 SHBQ15464 509 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 LGI3Q8N145 548 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 LRRC18Q8N456 261 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 OR52M1Q8NGK5 317 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 C20orf24Q9BUV8 137 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 SMDT1Q9H4I9 107 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 ZNF581Q9P0T4 197 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 NXT1Q9UKK6 140 aaKnown RBP16.61■□□□□ 0.25
RTN4-201ENST00000317610 CHCHD2Q9Y6H1 151 aaPredicted RBP16.61■□□□□ 0.25
RTN4-201ENST00000317610 ANGPTL7O43827 346 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 C1QL1O75973 258 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 ONECUT2O95948 504 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 YPEL4Q96NS1 127 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 ZNF385AQ96PM9 386 aaKnown RBP16.61■□□□□ 0.25
RTN4-201ENST00000317610 KCNJ16Q9NPI9 418 aa16.61■□□□□ 0.25
RTN4-201ENST00000317610 IGKV1-27A0A075B6S5 117 aa16.6■□□□□ 0.25
RTN4-201ENST00000317610 A0A087WZY1 265 aa16.6■□□□□ 0.25
RTN4-201ENST00000317610 CRYGSP22914 178 aa16.6■□□□□ 0.25
RTN4-201ENST00000317610 STARD6P59095 220 aa16.6■□□□□ 0.25
RTN4-201ENST00000317610 ZNF385CQ66K41 422 aaPredicted RBP16.6■□□□□ 0.25
RTN4-201ENST00000317610 FBXW12Q6X9E4 464 aa16.6■□□□□ 0.25
RTN4-201ENST00000317610 C1QL4Q86Z23 238 aa16.6■□□□□ 0.25
RTN4-201ENST00000317610 OR4D5Q8NGN0 318 aa16.6■□□□□ 0.25
RTN4-201ENST00000317610 FBXO17Q96EF6 278 aa16.6■□□□□ 0.25
RTN4-201ENST00000317610 SPSB2Q99619 263 aa16.6■□□□□ 0.25
RTN4-201ENST00000317610 OR51M1Q9H341 326 aa16.6■□□□□ 0.25
RTN4-201ENST00000317610 NIT2Q9NQR4 276 aa16.6■□□□□ 0.25
RTN4-201ENST00000317610 PLEK2Q9NYT0 353 aa16.6■□□□□ 0.25
RTN4-201ENST00000317610 CCDC187A0A096LP49 1063 aa16.59■□□□□ 0.25
RTN4-201ENST00000317610 EIF1BO60739 113 aaKnown RBP16.59■□□□□ 0.25
RTN4-201ENST00000317610 PRH1P02810 166 aa16.59■□□□□ 0.25
RTN4-201ENST00000317610 CLINT1Q14677 625 aa16.59■□□□□ 0.25
RTN4-201ENST00000317610 TSPO2Q5TGU0 170 aa16.59■□□□□ 0.25
RTN4-201ENST00000317610 ZNF574Q6ZN55 896 aaPredicted RBP16.59■□□□□ 0.25
RTN4-201ENST00000317610 FAM24BQ8N5W8 94 aa16.59■□□□□ 0.25
RTN4-201ENST00000317610 SNIP1Q8TAD8 396 aaKnown RBP16.59■□□□□ 0.25
RTN4-201ENST00000317610 MOB3AQ96BX8 217 aa16.59■□□□□ 0.25
RTN4-201ENST00000317610 NTNG2Q96CW9 530 aa16.59■□□□□ 0.25
RTN4-201ENST00000317610 C11orf1Q9H5F2 150 aa16.59■□□□□ 0.25
RTN4-201ENST00000317610 FOXD3Q9UJU5 478 aaPredicted RBP16.59■□□□□ 0.25
RTN4-201ENST00000317610 SPRY1O43609 319 aaPredicted RBP16.59■□□□□ 0.25
RTN4-201ENST00000317610 VAMP5O95183 116 aa16.59■□□□□ 0.25
RTN4-201ENST00000317610 NHLH2Q02577 135 aa16.59■□□□□ 0.25
RTN4-201ENST00000317610 CNN3Q15417 329 aaKnown RBP16.59■□□□□ 0.25
RTN4-201ENST00000317610 RSPO4Q2I0M5 234 aaPredicted RBP16.59■□□□□ 0.25
RTN4-201ENST00000317610 PHLDA2Q53GA4 152 aa16.59■□□□□ 0.25
RTN4-201ENST00000317610 SYT3Q9BQG1 590 aa16.59■□□□□ 0.25
RTN4-201ENST00000317610 RCL1Q9Y2P8 373 aaKnown RBP16.59■□□□□ 0.25
RTN4-201ENST00000317610 TMED3Q9Y3Q3 217 aa16.59■□□□□ 0.25
RTN4-201ENST00000317610 CEP192Q8TEP8 1941 aa16.59■□□□□ 0.25
RTN4-201ENST00000317610 AP4M1O00189 453 aa16.58■□□□□ 0.25
RTN4-201ENST00000317610 SCRG1O75711 98 aa16.58■□□□□ 0.25
RTN4-201ENST00000317610 ZNF205O95201 554 aa16.58■□□□□ 0.25
RTN4-201ENST00000317610 FXYD4P59646 89 aa16.58■□□□□ 0.25
RTN4-201ENST00000317610 FAM27BQ5VT28 67 aa16.58■□□□□ 0.25
RTN4-201ENST00000317610 INTS12Q96CB8 462 aaKnown RBP16.58■□□□□ 0.25
RTN4-201ENST00000317610 OR6C1Q96RD1 312 aa16.58■□□□□ 0.25
RTN4-201ENST00000317610 RBM24Q9BX46 236 aaKnown RBP16.58■□□□□ 0.25
RTN4-201ENST00000317610 DEFB126Q9BYW3 111 aa16.58■□□□□ 0.25
RTN4-201ENST00000317610 FBXO7Q9Y3I1 522 aa16.58■□□□□ 0.25
RTN4-201ENST00000317610 EML6Q6ZMW3 1958 aa16.58■□□□□ 0.25
RTN4-201ENST00000317610 MED12Q93074 2177 aa16.58■□□□□ 0.24
RTN4-201ENST00000317610 A0A1W2PPE2 198 aa16.58■□□□□ 0.24
RTN4-201ENST00000317610 ARG1P05089 322 aa16.58■□□□□ 0.24
RTN4-201ENST00000317610 PPP1CCP36873 323 aaKnown RBP16.58■□□□□ 0.24
RTN4-201ENST00000317610 CHAF1BQ13112 559 aa16.58■□□□□ 0.24
RTN4-201ENST00000317610 HSD17B11Q8NBQ5 300 aa16.58■□□□□ 0.24
RTN4-201ENST00000317610 OR5L1Q8NGL2 311 aa16.58■□□□□ 0.24
RTN4-201ENST00000317610 TCTEX1D2Q8WW35 142 aa16.58■□□□□ 0.24
RTN4-201ENST00000317610 BOD1Q96IK1 185 aa16.58■□□□□ 0.24
RTN4-201ENST00000317610 RSRP1Q9BUV0 290 aa16.58■□□□□ 0.24
RTN4-201ENST00000317610 FAM230AA0A1W2PPH8 454 aa16.57■□□□□ 0.24
RTN4-201ENST00000317610 CLN5O75503 358 aa16.57■□□□□ 0.24
RTN4-201ENST00000317610 EIF2S3P41091 472 aaKnown RBP16.57■□□□□ 0.24
RTN4-201ENST00000317610 MRPS34P82930 218 aaKnown RBP16.57■□□□□ 0.24
RTN4-201ENST00000317610 PRAMEF20Q5VT98 475 aa16.57■□□□□ 0.24
RTN4-201ENST00000317610 SLC22A25Q6T423 547 aa16.57■□□□□ 0.24
RTN4-201ENST00000317610 PPP1R3BQ86XI6 285 aa16.57■□□□□ 0.24
RTN4-201ENST00000317610 OR10AD1Q8NGE0 317 aa16.57■□□□□ 0.24
RTN4-201ENST00000317610 REEP6Q96HR9 211 aa16.57■□□□□ 0.24
RTN4-201ENST00000317610 C19orf25Q9UFG5 118 aaPredicted RBP16.57■□□□□ 0.24
RTN4-201ENST00000317610 RTTNQ86VV8 2226 aa16.57■□□□□ 0.24
RTN4-201ENST00000317610 ABCA7Q8IZY2 2146 aa16.57■□□□□ 0.24
RTN4-201ENST00000317610 NPIPA2E9PIF3 369 aa16.57■□□□□ 0.24
RTN4-201ENST00000317610 NPIPA3F8WFD2 350 aa16.57■□□□□ 0.24
RTN4-201ENST00000317610 TP53I11O14683 189 aa16.57■□□□□ 0.24
RTN4-201ENST00000317610 PNLIPP16233 465 aa16.57■□□□□ 0.24
RTN4-201ENST00000317610 EWSR1Q01844 656 aaKnown RBP eCLIP16.57■□□□□ 0.242e-7■■■□□ 18.2
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms