RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 TERTO14746 1132 aaKnown RBP15.87■□□□□ 0.13
SHKBP1-201ENST00000291842 SPINK2P20155 84 aa15.87■□□□□ 0.13
SHKBP1-201ENST00000291842 RBM39Q14498 530 aaKnown RBP15.87■□□□□ 0.13
SHKBP1-201ENST00000291842 SURF2Q15527 256 aaPredicted RBP15.87■□□□□ 0.13
SHKBP1-201ENST00000291842 SLC22A25Q6T423 547 aa15.87■□□□□ 0.13
SHKBP1-201ENST00000291842 DHRS13Q6UX07 377 aa15.87■□□□□ 0.13
SHKBP1-201ENST00000291842 ASCL4Q6XD76 172 aa15.87■□□□□ 0.13
SHKBP1-201ENST00000291842 SLC25A26Q70HW3 274 aa15.87■□□□□ 0.13
SHKBP1-201ENST00000291842 TMED6Q8WW62 240 aa15.87■□□□□ 0.13
SHKBP1-201ENST00000291842 NARS2Q96I59 477 aaKnown RBP15.87■□□□□ 0.13
SHKBP1-201ENST00000291842 HSF4Q9ULV5 492 aa15.87■□□□□ 0.13
SHKBP1-201ENST00000291842 PCDHB10Q9UN67 800 aa15.87■□□□□ 0.13
SHKBP1-201ENST00000291842 ZNF816-ZNF321PA0A0X1KG74 233 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 C5orf49A4QMS7 147 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 RRP8O43159 456 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 AKR1C2P52895 323 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 AKR1C1Q04828 323 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 TMEM164Q5U3C3 297 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 ATRAIDQ6UW56 229 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 SGPP2Q8IWX5 399 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 ZNF611Q8N823 705 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 TMEM45BQ96B21 275 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 PRRG4Q9BZD6 226 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 FAM117AQ9C073 453 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 RGCCQ9H4X1 137 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 B4GALT7Q9UBV7 327 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 ZNF629Q9UEG4 869 aaPredicted RBP15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 A0A1B0GW55 424 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 F8VVB4 439 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 F8VWA3 439 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 DUX4L2P0CJ85 424 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 DUX4L3P0CJ86 424 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 DUX4L4P0CJ87 422 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 DUX4L5P0CJ88 424 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 DUX4L6P0CJ89 424 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 DUX4L7P0CJ90 424 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 PIGPP57054 158 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 PLGLB1Q02325 96 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 IAH1Q2TAA2 248 aaPredicted RBP15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 ZNF585AQ6P3V2 769 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 BPIFCQ8NFQ6 507 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 PAPOLGQ9BWT3 736 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 C1QTNF5Q9BXJ0 243 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 BCO1Q9HAY6 547 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 NECAP2Q9NVZ3 263 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 C1orf123Q9NWV4 160 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 DUX4Q9UBX2 424 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 EDARQ9UNE0 448 aa15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 PRRC2CQ9Y520 2896 aaKnown RBP15.86■□□□□ 0.13
SHKBP1-201ENST00000291842 CDX4O14627 284 aaPredicted RBP15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 XRCC2O43543 280 aa15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 TPT1P13693 172 aaKnown RBP15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 AIMP2Q13155 320 aaKnown RBP15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 Q6ZPA2 131 aa15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 BAP18Q8IXM2 172 aa15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 ZNF100Q8IYN0 542 aa15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 TMEM251Q8N6I4 163 aa15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 OR56B2PQ8NGI1 322 aa15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 ZNF391Q9UJN7 358 aa15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 IGKV3D-15A0A087WSY6 115 aa15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 M0R296 226 aa15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 OR7C1O76099 320 aaPredicted RBP15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 CTSDP07339 412 aaPredicted RBP15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 CD79AP11912 226 aa15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 IL15RAQ13261 267 aa15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 PHLDA2Q53GA4 152 aa15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 C5orf24Q7Z6I8 188 aa15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 MRPL24Q96A35 216 aaKnown RBP15.85■□□□□ 0.13
SHKBP1-201ENST00000291842 CRYM-AS1A6NIL9 109 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 SYNGR4O95473 234 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 ZNF708P17019 499 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 FCGR2CP31995 323 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 STOML3Q8TAV4 291 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 GPR87Q9BY21 358 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 SHANK1Q9Y566 2161 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 LOC400499M0QZD8 3231 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 MT-CO3P00414 261 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 ZNF728P0DKX0 622 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 RBM11P57052 281 aaKnown RBP15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 PLEKHN1Q494U1 663 aaPredicted RBP15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 ATP1A1-AS1Q5TC04 95 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 NSUN5P2Q63ZY6 315 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 PRDM14Q9GZV8 571 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 ZNF442Q9H7R0 627 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 PARPBPQ9NWS1 579 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 R4GN57 208 aa15.84■□□□□ 0.13
SHKBP1-201ENST00000291842 SCGB1D2O95969 90 aa15.83■□□□□ 0.12
SHKBP1-201ENST00000291842 LYL1P12980 280 aa15.83■□□□□ 0.12
SHKBP1-201ENST00000291842 DTYMKP23919 212 aa15.83■□□□□ 0.12
SHKBP1-201ENST00000291842 DEFA5Q01523 94 aa15.83■□□□□ 0.12
SHKBP1-201ENST00000291842 MALLQ13021 153 aa15.83■□□□□ 0.12
SHKBP1-201ENST00000291842 DAZAP2Q15038 168 aaPredicted RBP15.83■□□□□ 0.12
SHKBP1-201ENST00000291842 GGNBP1Q5YKI7 109 aa15.83■□□□□ 0.12
SHKBP1-201ENST00000291842 OR2A2Q6IF42 318 aa15.83■□□□□ 0.12
SHKBP1-201ENST00000291842 SPERTQ8NA61 448 aa15.83■□□□□ 0.12
SHKBP1-201ENST00000291842 SPSB4Q96A44 273 aa15.83■□□□□ 0.12
SHKBP1-201ENST00000291842 HS3ST6Q96QI5 342 aa15.83■□□□□ 0.12
SHKBP1-201ENST00000291842 DNTTIP1Q9H147 329 aa15.83■□□□□ 0.12
SHKBP1-201ENST00000291842 ZC4H2Q9NQZ6 224 aa15.83■□□□□ 0.12
SHKBP1-201ENST00000291842 ABI3Q9P2A4 366 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms