RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 NKX3-1Q99801 234 aaPredicted RBP24.9■■□□□ 1.58
LIMCH1-211ENST00000509638 PKIBQ9C010 78 aa24.9■■□□□ 1.58
LIMCH1-211ENST00000509638 EXOSC4Q9NPD3 245 aaKnown RBP24.9■■□□□ 1.58
LIMCH1-211ENST00000509638 POLDIP2Q9Y2S7 368 aa24.9■■□□□ 1.58
LIMCH1-211ENST00000509638 VWC2LB2RUY7 222 aa24.89■■□□□ 1.58
LIMCH1-211ENST00000509638 EGR1P18146 543 aa24.89■■□□□ 1.58
LIMCH1-211ENST00000509638 GADD45AP24522 165 aa24.89■■□□□ 1.58
LIMCH1-211ENST00000509638 OR51E2Q9H255 320 aa24.89■■□□□ 1.58
LIMCH1-211ENST00000509638 NPTNQ9Y639 398 aa24.89■■□□□ 1.58
LIMCH1-211ENST00000509638 TRIM64BA6NI03 449 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 AKR7A2O43488 359 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 CD80P33681 288 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 CFHR2P36980 270 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 NR4A2P43354 598 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 BTG1P62324 171 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 IL24Q13007 206 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 C22orf42Q6IC83 251 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 SLC25A26Q70HW3 274 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 SATL1Q86VE3 508 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 OR13F1Q8NGS4 319 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 OR10Z1Q8NGY1 313 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 RAB1CQ92928 201 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 YIPF6Q96EC8 236 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 GPER1Q99527 375 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 SRRM5B3KS81 715 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 ALDOBP05062 364 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 SLC25A16P16260 332 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 SRMP19623 302 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 GMFBP60983 142 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 ZMYND11Q15326 602 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 NKAIN3Q8N8D7 197 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 C19orf18Q8NEA5 215 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 CHCHD6Q9BRQ6 235 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 SLITRK2Q9H156 845 aa24.88■■□□□ 1.57
LIMCH1-211ENST00000509638 ISPDA4D126 451 aa24.87■■□□□ 1.57
LIMCH1-211ENST00000509638 LHBP01229 141 aa24.87■■□□□ 1.57
LIMCH1-211ENST00000509638 IGHV2-70P01814 119 aa24.87■■□□□ 1.57
LIMCH1-211ENST00000509638 TFAP2AP05549 437 aa24.87■■□□□ 1.57
LIMCH1-211ENST00000509638 ZNF93P35789 620 aaPredicted RBP24.87■■□□□ 1.57
LIMCH1-211ENST00000509638 LRRTM1Q86UE6 522 aa24.87■■□□□ 1.57
LIMCH1-211ENST00000509638 ZNF671Q8TAW3 534 aa24.87■■□□□ 1.57
LIMCH1-211ENST00000509638 ZNF488Q96MN9 340 aa24.87■■□□□ 1.57
LIMCH1-211ENST00000509638 NARFLQ9H6Q4 476 aa24.87■■□□□ 1.57
LIMCH1-211ENST00000509638 TXNL4BQ9NX01 149 aaKnown RBP24.87■■□□□ 1.57
LIMCH1-211ENST00000509638 SSR3Q9UNL2 185 aa24.87■■□□□ 1.57
LIMCH1-211ENST00000509638 LOC100506127A0A0U1RQW1 187 aa24.86■■□□□ 1.57
LIMCH1-211ENST00000509638 C3orf80F5H4A9 247 aa24.86■■□□□ 1.57
LIMCH1-211ENST00000509638 SPRY1O43609 319 aaPredicted RBP24.86■■□□□ 1.57
LIMCH1-211ENST00000509638 PGA5P0DJD9 388 aa24.86■■□□□ 1.57
LIMCH1-211ENST00000509638 ADRA2CP18825 462 aa24.86■■□□□ 1.57
LIMCH1-211ENST00000509638 PDZK1IP1Q13113 114 aa24.86■■□□□ 1.57
LIMCH1-211ENST00000509638 BATF2Q8N1L9 274 aa24.86■■□□□ 1.57
LIMCH1-211ENST00000509638 SLAMF9Q96A28 289 aa24.86■■□□□ 1.57
LIMCH1-211ENST00000509638 TMIGD2Q96BF3 282 aa24.86■■□□□ 1.57
LIMCH1-211ENST00000509638 ZANQ9Y493 2812 aa24.86■■□□□ 1.57
LIMCH1-211ENST00000509638 WNT9BO14905 357 aa24.85■■□□□ 1.57
LIMCH1-211ENST00000509638 FGF9P31371 208 aaPredicted RBP24.85■■□□□ 1.57
LIMCH1-211ENST00000509638 ZP1P60852 638 aa24.85■■□□□ 1.57
LIMCH1-211ENST00000509638 JAGN1Q8N5M9 183 aa24.85■■□□□ 1.57
LIMCH1-211ENST00000509638 POC1AQ8NBT0 407 aa24.85■■□□□ 1.57
LIMCH1-211ENST00000509638 FAM192AQ9GZU8 254 aa24.85■■□□□ 1.57
LIMCH1-211ENST00000509638 WDR13Q9H1Z4 485 aa24.85■■□□□ 1.57
LIMCH1-211ENST00000509638 SNTG1Q9NSN8 517 aa24.85■■□□□ 1.57
LIMCH1-211ENST00000509638 SCOCQ9UIL1 159 aa24.85■■□□□ 1.57
LIMCH1-211ENST00000509638 PPIAL4EA0A075B759 164 aa24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 PPIAL4DF5H284 164 aa24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 ANGPTL7O43827 346 aa24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 CYB5AP00167 134 aa24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 PPIAL4FP0DN26 164 aa24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 ALDH3B2P48448 385 aa24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 TIMM50Q3ZCQ8 353 aa24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 SFRP4Q6FHJ7 346 aaPredicted RBP24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 NRIP2Q9BQI9 281 aa24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 PPIAL4AQ9Y536 164 aa24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 CR1P17927 2039 aa24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 MYL9P24844 172 aa24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 MDH2P40926 338 aaKnown RBP24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 OR3A4PP47883 348 aa24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 PNLDC1Q8NA58 520 aaKnown RBP24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 TNFAIP8L1Q8WVP5 186 aa24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 MTCH1Q9NZJ7 389 aa24.84■■□□□ 1.57
LIMCH1-211ENST00000509638 IGHV3OR15-7A0A075B7D8 119 aa24.83■■□□□ 1.57
LIMCH1-211ENST00000509638 IGHV4-61A0A0C4DH41 118 aa24.83■■□□□ 1.57
LIMCH1-211ENST00000509638 OOEPA6NGQ2 149 aa24.83■■□□□ 1.57
LIMCH1-211ENST00000509638 RNF223E7ERA6 249 aa24.83■■□□□ 1.57
LIMCH1-211ENST00000509638 GLRA1P23415 457 aa24.83■■□□□ 1.57
LIMCH1-211ENST00000509638 MKXQ8IYA7 352 aa24.83■■□□□ 1.57
LIMCH1-211ENST00000509638 DEFB108BQ8NET1 73 aa24.83■■□□□ 1.57
LIMCH1-211ENST00000509638 OR51F2Q8NH61 342 aa24.83■■□□□ 1.57
LIMCH1-211ENST00000509638 SEH1LQ96EE3 360 aa24.83■■□□□ 1.57
LIMCH1-211ENST00000509638 CEP19Q96LK0 163 aa24.83■■□□□ 1.57
LIMCH1-211ENST00000509638 FUNDC2Q9BWH2 189 aa24.83■■□□□ 1.57
LIMCH1-211ENST00000509638 SMURF1Q9HCE7 757 aa24.83■■□□□ 1.57
LIMCH1-211ENST00000509638 A0A096LNT2 108 aa24.82■■□□□ 1.56
LIMCH1-211ENST00000509638 SHISA3A0PJX4 238 aa24.82■■□□□ 1.56
LIMCH1-211ENST00000509638 MEGF11A6BM72 1044 aa24.82■■□□□ 1.56
LIMCH1-211ENST00000509638 LGALS8O00214 317 aa24.82■■□□□ 1.56
LIMCH1-211ENST00000509638 NOS1APO75052 506 aaPredicted RBP24.82■■□□□ 1.56
LIMCH1-211ENST00000509638 TMEM225BP0DP42 221 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms