RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 SPATA24Q86W54 205 aa17.14■□□□□ 0.33
COL9A3-207ENST00000467819 ZNF679Q8IYX0 411 aa17.14■□□□□ 0.33
COL9A3-207ENST00000467819 BATF2Q8N1L9 274 aa17.14■□□□□ 0.33
COL9A3-207ENST00000467819 C11orf44Q8N8P7 122 aa17.14■□□□□ 0.33
COL9A3-207ENST00000467819 OR4C13Q8NGP0 309 aa17.14■□□□□ 0.33
COL9A3-207ENST00000467819 AJUBAQ96IF1 538 aa17.14■□□□□ 0.33
COL9A3-207ENST00000467819 C1orf21Q9H246 121 aa17.14■□□□□ 0.33
COL9A3-207ENST00000467819 NUFIP1Q9UHK0 495 aaKnown RBP17.14■□□□□ 0.33
COL9A3-207ENST00000467819 SLC1A7O00341 560 aa17.13■□□□□ 0.33
COL9A3-207ENST00000467819 ZNF254O75437 659 aa17.13■□□□□ 0.33
COL9A3-207ENST00000467819 COX7A1P24310 79 aa17.13■□□□□ 0.33
COL9A3-207ENST00000467819 HAAOP46952 286 aa17.13■□□□□ 0.33
COL9A3-207ENST00000467819 EFNB2P52799 333 aa17.13■□□□□ 0.33
COL9A3-207ENST00000467819 RPL31P62899 125 aaKnown RBP17.13■□□□□ 0.33
COL9A3-207ENST00000467819 CBX1P83916 185 aa17.13■□□□□ 0.33
COL9A3-207ENST00000467819 ZBTB37Q5TC79 503 aa17.13■□□□□ 0.33
COL9A3-207ENST00000467819 OR4M1Q8NGD0 313 aa17.13■□□□□ 0.33
COL9A3-207ENST00000467819 MEGF9Q9H1U4 602 aa17.13■□□□□ 0.33
COL9A3-207ENST00000467819 GPR173Q9NS66 373 aa17.13■□□□□ 0.33
COL9A3-207ENST00000467819 FOXJ3Q9UPW0 622 aa17.13■□□□□ 0.33
COL9A3-207ENST00000467819 TMEM14AQ9Y6G1 99 aa17.13■□□□□ 0.33
COL9A3-207ENST00000467819 J3QT63 122 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 DHRS3O75911 302 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 TTRP02766 147 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 PGA5P0DJD9 388 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 PRDX2P32119 198 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 BMXP51813 675 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 ERVFRD-1P60508 538 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 ESRRGP62508 458 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 ROM1Q03395 351 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 TMEM200BQ69YZ2 307 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 ZNF561Q8N587 486 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 OR5K1Q8NHB7 308 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 ASB17Q8WXJ9 295 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 ITFG2Q969R8 447 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 HEXA-AS1Q9H8Q6 139 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 DNAJB9Q9UBS3 223 aa17.12■□□□□ 0.33
COL9A3-207ENST00000467819 A0A1W2PPH5 198 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 LOC110117498-PIK3R3F6TDL0 507 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 FKBP6O75344 327 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 NXPH2O95156 264 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 FAM107AO95990 144 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 CCL3L1P16619 93 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 HOXB6P17509 224 aaKnown RBP17.11■□□□□ 0.33
COL9A3-207ENST00000467819 KIR2DS4P43632 304 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 CRISP1P54107 249 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 FLOT2Q14254 428 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 CLVS2Q5SYC1 327 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 BCDIN3DQ7Z5W3 292 aaKnown RBP17.11■□□□□ 0.33
COL9A3-207ENST00000467819 ZNF573Q86YE8 665 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 KLHDC1Q8N7A1 406 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 OR2T27Q8NH04 317 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 OR2T6Q8NHC8 308 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 CNN2Q99439 309 aaKnown RBP17.11■□□□□ 0.33
COL9A3-207ENST00000467819 RAB18Q9NP72 206 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 PAPOLBQ9NRJ5 636 aaKnown RBP17.11■□□□□ 0.33
COL9A3-207ENST00000467819 OR14J1Q9UGF5 321 aa17.11■□□□□ 0.33
COL9A3-207ENST00000467819 M0R129 80 aa17.1■□□□□ 0.33
COL9A3-207ENST00000467819 MAGEB4O15481 346 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-207ENST00000467819 PRKYO43930 277 aa17.1■□□□□ 0.33
COL9A3-207ENST00000467819 PIPP12273 146 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-207ENST00000467819 LGALS4P56470 323 aa17.1■□□□□ 0.33
COL9A3-207ENST00000467819 ZNF273Q14593 569 aa17.1■□□□□ 0.33
COL9A3-207ENST00000467819 CRIP3Q6Q6R5 217 aa17.1■□□□□ 0.33
COL9A3-207ENST00000467819 ZNF782Q6ZMW2 699 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-207ENST00000467819 PLEKHG7Q6ZR37 379 aa17.1■□□□□ 0.33
COL9A3-207ENST00000467819 ASRGL1Q7L266 308 aa17.1■□□□□ 0.33
COL9A3-207ENST00000467819 C11orf42Q8N5U0 333 aa17.1■□□□□ 0.33
COL9A3-207ENST00000467819 NKX3-1Q99801 234 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-207ENST00000467819 APOL4Q9BPW4 351 aa17.1■□□□□ 0.33
COL9A3-207ENST00000467819 RANBP3Q9H6Z4 567 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-207ENST00000467819 USE1Q9NZ43 259 aa17.1■□□□□ 0.33
COL9A3-207ENST00000467819 POLDIP2Q9Y2S7 368 aa17.1■□□□□ 0.33
COL9A3-207ENST00000467819 A6NIN4 97 aa17.09■□□□□ 0.33
COL9A3-207ENST00000467819 G3V4G9 280 aa17.09■□□□□ 0.33
COL9A3-207ENST00000467819 CHST1O43916 411 aa17.09■□□□□ 0.33
COL9A3-207ENST00000467819 SRSF10O75494 262 aaKnown RBP17.09■□□□□ 0.33
COL9A3-207ENST00000467819 CXCR4P61073 352 aa17.09■□□□□ 0.33
COL9A3-207ENST00000467819 AANATQ16613 207 aa17.09■□□□□ 0.33
COL9A3-207ENST00000467819 PLA1AQ53H76 456 aa17.09■□□□□ 0.33
COL9A3-207ENST00000467819 BCL2L15Q5TBC7 163 aa17.09■□□□□ 0.33
COL9A3-207ENST00000467819 C11orf88Q6PI97 169 aa17.09■□□□□ 0.33
COL9A3-207ENST00000467819 ZNF322Q6U7Q0 402 aaPredicted RBP17.09■□□□□ 0.33
COL9A3-207ENST00000467819 DNAJC9Q8WXX5 260 aa17.09■□□□□ 0.33
COL9A3-207ENST00000467819 NRIP2Q9BQI9 281 aa17.09■□□□□ 0.33
COL9A3-207ENST00000467819 MOB1AQ9H8S9 216 aa17.09■□□□□ 0.33
COL9A3-207ENST00000467819 hCG_1809904A0A1W2PP81 198 aa17.08■□□□□ 0.32
COL9A3-207ENST00000467819 A0A1W2PPE2 198 aa17.08■□□□□ 0.32
COL9A3-207ENST00000467819 A0A1W2PR64 198 aa17.08■□□□□ 0.32
COL9A3-207ENST00000467819 A0A1W2PRV1 198 aa17.08■□□□□ 0.32
COL9A3-207ENST00000467819 PQLC2LA1A4F0 135 aa17.08■□□□□ 0.32
COL9A3-207ENST00000467819 VSIG10L2P0DP72 767 aa17.08■□□□□ 0.32
COL9A3-207ENST00000467819 DAPP51397 102 aa17.08■□□□□ 0.32
COL9A3-207ENST00000467819 PTGES3Q15185 160 aaKnown RBP17.08■□□□□ 0.32
COL9A3-207ENST00000467819 TMEM42Q69YG0 159 aa17.08■□□□□ 0.32
COL9A3-207ENST00000467819 MEPCEQ7L2J0 689 aaKnown RBP17.08■□□□□ 0.32
COL9A3-207ENST00000467819 LHFPL4Q7Z7J7 247 aa17.08■□□□□ 0.32
COL9A3-207ENST00000467819 SLC35F2Q8IXU6 374 aa17.08■□□□□ 0.32
COL9A3-207ENST00000467819 NPFFR1Q9GZQ6 430 aa17.08■□□□□ 0.32
COL9A3-207ENST00000467819 OR52A1Q9UKL2 312 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms