RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 ATP1B1P05026 303 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 CTXN2P0C2S0 81 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 CCL2P13500 99 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 PLA2G2AP14555 144 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 CSNK2A2P19784 350 aaPredicted RBP3.96□□□□□ -1.78
SF3B1-202ENST00000409915 HOXA5P20719 270 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 PSMB9P28065 219 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 HTR1EP28566 365 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 NTSP30990 170 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 MAP2K4P45985 399 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 UQCRFS1P47985 274 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 SOX2P48431 317 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 SSR4P51571 173 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 NCBP2P52298 156 aaKnown RBP eCLIP3.96□□□□□ -1.783e-13■■□□□ 12.1
SF3B1-202ENST00000409915 DIO3P55073 304 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 LSM3P62310 102 aaKnown RBP3.96□□□□□ -1.78
SF3B1-202ENST00000409915 HOXC5Q00444 222 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 GAGE2BQ13066 116 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 RCAN2Q14206 197 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 HEPACAMQ14CZ8 416 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 EBPQ15125 230 aaKnown RBP3.96□□□□□ -1.78
SF3B1-202ENST00000409915 FCN2Q15485 313 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 ZNF630Q2M218 657 aaPredicted RBP3.96□□□□□ -1.78
SF3B1-202ENST00000409915 GAGE2EQ4V326 116 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 TRMT12Q53H54 448 aaKnown RBP3.96□□□□□ -1.78
SF3B1-202ENST00000409915 PYY3Q5JQD4 70 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 MEDAGQ5VYS4 303 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 GAGE2AQ6NT46 116 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 ACSM5Q6NUN0 579 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 H3F3CQ6NXT2 135 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 PRSS57Q6UWY2 283 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 IGFL3Q6UXB1 125 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 RNF165Q6ZSG1 346 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 CHMP1BQ7LBR1 199 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 SLC29A4Q7RTT9 530 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 SMIM15Q7Z3B0 74 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 NAA40Q86UY6 237 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 PUSL1Q8N0Z8 303 aaKnown RBP3.96□□□□□ -1.78
SF3B1-202ENST00000409915 TMEM156Q8N614 296 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 CLDN22Q8N7P3 220 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 THAP8Q8NA92 274 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 MDS2Q8NDY4 140 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 OR7G2Q8NG99 324 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 OR11H7Q8NGC8 314 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 OR52R1Q8NGF1 315 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 OR2D3Q8NGH3 330 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 OR1L4Q8NGR5 311 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 OR2V1Q8NHB1 315 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 C16orf52Q8NHV5 167 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 TMEM203Q969S6 136 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 UPRTQ96BW1 309 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 PPCDCQ96CD2 204 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 ZG16BQ96DA0 208 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 RAB3CQ96E17 227 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 CXorf58Q96LI9 332 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 UTP23Q9BRU9 249 aaKnown RBP3.96□□□□□ -1.78
SF3B1-202ENST00000409915 ST6GALNAC5Q9BVH7 336 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 ALG8Q9BVK2 526 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 RBM24Q9BX46 236 aaKnown RBP3.96□□□□□ -1.78
SF3B1-202ENST00000409915 TAPBPLQ9BX59 468 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 PARD6GQ9BYG4 376 aaPredicted RBP3.96□□□□□ -1.78
SF3B1-202ENST00000409915 CHST5Q9GZS9 411 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 HDHD2Q9H0R4 259 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 MED28Q9H204 178 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 GLIPR2Q9H4G4 154 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 GALNT9Q9HCQ5 603 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 DEPPQ9NTK1 212 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 ASF1BQ9NVP2 202 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 C1RLQ9NZP8 487 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 GAGE2DQ9UEU5 116 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 ZNF346Q9UL40 294 aaKnown RBP3.96□□□□□ -1.78
SF3B1-202ENST00000409915 WDR83OSQ9Y284 106 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 TMED3Q9Y3Q3 217 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 RNF115Q9Y4L5 304 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 ZNF780BQ9Y6R6 833 aa3.96□□□□□ -1.78
SF3B1-202ENST00000409915 FASNP49327 2511 aaKnown RBP3.96□□□□□ -1.78
SF3B1-202ENST00000409915 COL12A1Q99715 3063 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 TRAV17A0A0B4J275 112 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 SMCO3A2RU48 225 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 PINLYPA6NC86 204 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 VWC2LB2RUY7 222 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 TMEM238C9JI98 176 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 NPIPB6E9PJ23 425 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 NPIPA3F8WFD2 350 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 SMLR1H3BR10 107 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 FXYD1O00168 92 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 MRASO14807 208 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 NBR2O15453 112 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 ZNHIT1O43257 154 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 TPST1O60507 370 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 CDC14BO60729 498 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 SCN2BO60939 215 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 ICOSLGO75144 302 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 SCGNO76038 276 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 NDUFB4O95168 129 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 C6orf47O95873 294 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 MT-ND4LP03901 98 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 ERCC1P07992 297 aaPredicted RBP3.95□□□□□ -1.78
SF3B1-202ENST00000409915 NPSP0C0P6 89 aa3.95□□□□□ -1.78
SF3B1-202ENST00000409915 HKR1P10072 659 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 157.8 ms