RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CBR1P16152 277 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 SLC6A12P48065 614 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 WNT4P56705 351 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 MFGE8Q08431 387 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 SLC9A3R2Q15599 337 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 WDFY1Q8IWB7 410 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 MAPK1IP1LQ8NDC0 245 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 RBMXL1Q96E39 390 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 ECM29Q5VYK3 1845 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 PSCAO43653 123 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 ATF1P18846 271 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 CEACAM6P40199 344 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 EFNA4P52798 201 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 ATP5G2Q06055 141 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 TAF9Q16594 264 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 OTPQ5XKR4 325 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 NSUN5P2Q63ZY6 315 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNF547Q8IVP9 402 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 ITLN2Q8WWU7 325 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 STUB1Q9UNE7 303 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 MYH7P12883 1935 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNF638Q14966 1978 aaKnown RBP8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 TMEM210A6NLX4 147 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 GSTZ1O43708 216 aaPredicted RBP8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 ROM1Q03395 351 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 RAB40BQ12829 278 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 VN1R4Q7Z5H5 301 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 OR2B2Q9GZK3 357 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 BOLA1Q9Y3E2 137 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 XKRY2A2RUG3 117 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 HMGN4O00479 90 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 MT-ND4P03905 459 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 AADACP22760 399 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 REG1BP48304 166 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 KCNJ3P48549 501 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 OR6X1Q8NH79 312 aa8.1□□□□□ -1.11
LIMCH1-202ENST00000381753 GPRIN2O60269 458 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 B3GALNT1O75752 331 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 SLC22A5O76082 557 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 HAND1O96004 215 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 PNPP00491 289 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 HOXB1P14653 301 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 TAS2R45P59539 299 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 Q3ZCU0 254 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 Q499Y3 187 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 PFDN5Q99471 154 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 NTN4Q9HB63 628 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 SDR39U1Q9NRG7 319 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 RCE1Q9Y256 329 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 G3V2L1 256 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 TIAF1O95411 115 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 PPP1CCP36873 323 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 GATA4P43694 442 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNF239Q16600 458 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 DUSP7Q16829 419 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 GLYATL3Q5SZD4 288 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 OR2T11Q8NH01 316 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 GTF2H4Q92759 462 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 MTCH1Q9NZJ7 389 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNFX1Q9P2E3 1918 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 CXorf65A6NEN9 183 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 TMEM200CA6NKL6 621 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 I3L521 148 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 DCTN6O00399 190 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 KCNAB3O43448 404 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 LANCL1O43813 399 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 SS18L1O75177 396 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 NKX2-2O95096 273 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 LYZP61626 148 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 FLI1Q01543 452 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 ZIC1Q15915 447 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 TSPO2Q5TGU0 170 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 COLCA1Q6ZS62 124 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 NKAIN4Q8IVV8 208 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 SPACA5Q96QH8 159 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 RAB22AQ9UL26 194 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 COL11A2P13942 1736 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 WNT9BO14905 357 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 SOD1P00441 154 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 NFYAP23511 347 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 COL19A1Q14993 1142 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 IZUMO4Q1ZYL8 232 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 PNKDQ8N490 385 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 DUSP18Q8NEJ0 188 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 Q8WTZ3 238 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 TGIF2Q9GZN2 237 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 SLC25A22Q9H936 323 aa8.09□□□□□ -1.11
LIMCH1-202ENST00000381753 ANKRD12Q6UB98 2062 aa8.08□□□□□ -1.12
LIMCH1-202ENST00000381753 CDHR4A6H8M9 788 aa8.08□□□□□ -1.12
LIMCH1-202ENST00000381753 RER1O15258 196 aa8.08□□□□□ -1.12
LIMCH1-202ENST00000381753 CST2P09228 141 aa8.08□□□□□ -1.12
LIMCH1-202ENST00000381753 INHBBP09529 407 aa8.08□□□□□ -1.12
LIMCH1-202ENST00000381753 OMGP23515 440 aa8.08□□□□□ -1.12
LIMCH1-202ENST00000381753 C9orf40Q8IXQ3 194 aa8.08□□□□□ -1.12
LIMCH1-202ENST00000381753 BEST4Q8NFU0 473 aa8.08□□□□□ -1.12
LIMCH1-202ENST00000381753 OR13A1Q8NGR1 328 aa8.08□□□□□ -1.12
LIMCH1-202ENST00000381753 C19orf43Q9BQ61 176 aa8.08□□□□□ -1.12
LIMCH1-202ENST00000381753 BABAM2Q9NXR7 383 aa8.08□□□□□ -1.12
LIMCH1-202ENST00000381753 SERTM2A0A1B0GWG4 89 aa8.08□□□□□ -1.12
LIMCH1-202ENST00000381753 NOTOA8MTQ0 251 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 155.4 ms