RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SERPINA12Q8IW75 414 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 RDH5Q92781 318 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 YIPF5Q969M3 257 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 GCM1Q9NP62 436 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 PPP1R3CQ9UQK1 317 aa25.05■■□□□ 1.6
LIMCH1-211ENST00000509638 ITPR3Q14573 2671 aa25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 OR5B21A6NL26 309 aa25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 ZNF879B4DU55 563 aa25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 PTBP3O95758 552 aaKnown RBP25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 GRPP07492 148 aa25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 GABRA5P31644 462 aa25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 CRYBB2P43320 205 aa25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 GP2P55259 537 aaKnown RBP25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 MRPS11P82912 194 aaKnown RBP25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 MPPED2Q15777 294 aa25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 TRMT10AQ8TBZ6 339 aaKnown RBP25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 DERL3Q96Q80 235 aa25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 MYOZ1Q9NP98 299 aaPredicted RBP25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 UFSP2Q9NUQ7 469 aa25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 TAS2R4Q9NYW5 299 aa25.04■■□□□ 1.6
LIMCH1-211ENST00000509638 CCRL2O00421 344 aa25.03■■□□□ 1.6
LIMCH1-211ENST00000509638 GNG3P63215 75 aa25.03■■□□□ 1.6
LIMCH1-211ENST00000509638 ZNF154Q13106 437 aa25.03■■□□□ 1.6
LIMCH1-211ENST00000509638 CNN3Q15417 329 aaKnown RBP25.03■■□□□ 1.6
LIMCH1-211ENST00000509638 SYT6Q5T7P8 510 aaPredicted RBP25.03■■□□□ 1.6
LIMCH1-211ENST00000509638 ASPHD2Q6ICH7 369 aa25.03■■□□□ 1.6
LIMCH1-211ENST00000509638 KRTAP1-3Q8IUG1 177 aa25.03■■□□□ 1.6
LIMCH1-211ENST00000509638 OR5A2Q8NGI9 324 aa25.03■■□□□ 1.6
LIMCH1-211ENST00000509638 OR5D14Q8NGL3 314 aa25.03■■□□□ 1.6
LIMCH1-211ENST00000509638 ORAI1Q96D31 301 aa25.03■■□□□ 1.6
LIMCH1-211ENST00000509638 ZCCHC4Q9H5U6 513 aa25.03■■□□□ 1.6
LIMCH1-211ENST00000509638 ITGB1BP2Q9UKP3 347 aa25.03■■□□□ 1.6
LIMCH1-211ENST00000509638 SF3B6Q9Y3B4 125 aaKnown RBP25.03■■□□□ 1.6
LIMCH1-211ENST00000509638 IGKV1-9A0A0C4DH69 117 aa25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 TMEM210A6NLX4 147 aa25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 ZNF732B4DXR9 585 aa25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 COL8A2P25067 703 aa25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 PSMA1P25786 263 aaKnown RBP25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 MAPK3P27361 379 aaPredicted RBP25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 RBMXP38159 391 aaKnown RBP25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 CLEC2AQ6UVW9 174 aa25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 OR1M1Q8NGA1 313 aa25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 ZNF420Q8TAQ5 688 aaPredicted RBP25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 CCL17Q92583 94 aa25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 THRSPQ92748 146 aa25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 SLC7A11Q9UPY5 501 aa25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 CELSR1Q9NYQ6 3014 aa25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 MAST4O15021 2626 aa25.02■■□□□ 1.6
LIMCH1-211ENST00000509638 TRBV5-7A0A0A0MS05 114 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 A0A1W2PPK0 400 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 A6NLC8 198 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 RP2O75695 350 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 OCMP0CE72 109 aaPredicted RBP25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 TRAM1Q15629 374 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 HFEQ30201 348 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 ACSM3Q53FZ2 586 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 FN3KRPQ9HA64 309 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 DLL4Q9NR61 685 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 PQLC2LA1A4F0 135 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 SULT1B1O43704 296 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 SC5DO75845 299 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 ATF1P18846 271 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 AZGP1P25311 298 aaKnown RBP25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 CHODLQ9H9P2 273 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 DCAF16Q9NXF7 216 aa25.01■■□□□ 1.59
LIMCH1-211ENST00000509638 FAM230AA0A1W2PPH8 454 aa25■■□□□ 1.59
LIMCH1-211ENST00000509638 LRP5LA4QPB2 252 aa25■■□□□ 1.59
LIMCH1-211ENST00000509638 MAGEA13PA6NCF6 341 aa25■■□□□ 1.59
LIMCH1-211ENST00000509638 RGS9O75916 674 aaPredicted RBP25■■□□□ 1.59
LIMCH1-211ENST00000509638 CSF3P09919 207 aa25■■□□□ 1.59
LIMCH1-211ENST00000509638 PDLIM4P50479 330 aa25■■□□□ 1.59
LIMCH1-211ENST00000509638 CLEC12BQ2HXU8 276 aa25■■□□□ 1.59
LIMCH1-211ENST00000509638 SPSB1Q96BD6 273 aa25■■□□□ 1.59
LIMCH1-211ENST00000509638 NOX4Q9NPH5 578 aa25■■□□□ 1.59
LIMCH1-211ENST00000509638 CKLFQ9UBR5 152 aa25■■□□□ 1.59
LIMCH1-211ENST00000509638 FSTP19883 344 aa24.99■■□□□ 1.59
LIMCH1-211ENST00000509638 FABP5Q01469 135 aa24.99■■□□□ 1.59
LIMCH1-211ENST00000509638 FAM76BQ5HYJ3 339 aa24.99■■□□□ 1.59
LIMCH1-211ENST00000509638 FAM27D1Q5T7N8 215 aa24.99■■□□□ 1.59
LIMCH1-211ENST00000509638 DNM1P46Q6ZS02 220 aa24.99■■□□□ 1.59
LIMCH1-211ENST00000509638 OR51A2Q8NGJ7 313 aa24.99■■□□□ 1.59
LIMCH1-211ENST00000509638 FAM168AQ92567 244 aa24.99■■□□□ 1.59
LIMCH1-211ENST00000509638 RPL3LQ92901 407 aaKnown RBP24.99■■□□□ 1.59
LIMCH1-211ENST00000509638 ERGIC1Q969X5 290 aa24.99■■□□□ 1.59
LIMCH1-211ENST00000509638 MRPS26Q9BYN8 205 aaKnown RBP24.99■■□□□ 1.59
LIMCH1-211ENST00000509638 TLNRD1Q9H1K6 362 aa24.99■■□□□ 1.59
LIMCH1-211ENST00000509638 TMEM106BQ9NUM4 274 aa24.99■■□□□ 1.59
LIMCH1-211ENST00000509638 C1orf123Q9NWV4 160 aa24.99■■□□□ 1.59
LIMCH1-211ENST00000509638 RAB3AP20336 220 aa24.98■■□□□ 1.59
LIMCH1-211ENST00000509638 PMELP40967 661 aa24.98■■□□□ 1.59
LIMCH1-211ENST00000509638 FUT6P51993 359 aa24.98■■□□□ 1.59
LIMCH1-211ENST00000509638 PPP3R1P63098 170 aa24.98■■□□□ 1.59
LIMCH1-211ENST00000509638 ZNF529Q6P280 563 aa24.98■■□□□ 1.59
LIMCH1-211ENST00000509638 PRSS57Q6UWY2 283 aa24.98■■□□□ 1.59
LIMCH1-211ENST00000509638 ZNF826PQ6ZT77 177 aa24.98■■□□□ 1.59
LIMCH1-211ENST00000509638 CEACAM19Q7Z692 300 aa24.98■■□□□ 1.59
LIMCH1-211ENST00000509638 Q8TCH9 128 aa24.98■■□□□ 1.59
LIMCH1-211ENST00000509638 BORCS8Q96FH0 119 aa24.98■■□□□ 1.59
LIMCH1-211ENST00000509638 OR51I2Q9H344 312 aa24.98■■□□□ 1.59
LIMCH1-211ENST00000509638 TRAV8-7A0A075B6U6 113 aa24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms