RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 IGHV3-13P01766 116 aa10.28□□□□□ -0.76
PTPN4-201ENST00000263708 IGHV3-7P01780 117 aa10.28□□□□□ -0.76
PTPN4-201ENST00000263708 SLC26A10Q8NG04 563 aa10.28□□□□□ -0.76
PTPN4-201ENST00000263708 MOGAT1Q96PD6 335 aa10.28□□□□□ -0.76
PTPN4-201ENST00000263708 C19orf43Q9BQ61 176 aa10.28□□□□□ -0.76
PTPN4-201ENST00000263708 MARCH5Q9NX47 278 aa10.28□□□□□ -0.76
PTPN4-201ENST00000263708 HS3ST3A1Q9Y663 406 aa10.28□□□□□ -0.76
PTPN4-201ENST00000263708 CXCL13O43927 109 aa10.27□□□□□ -0.76
PTPN4-201ENST00000263708 EMC4Q5J8M3 183 aa10.27□□□□□ -0.76
PTPN4-201ENST00000263708 OR2A2Q6IF42 318 aa10.27□□□□□ -0.76
PTPN4-201ENST00000263708 C1QTNF3Q9BXJ4 246 aa10.27□□□□□ -0.76
PTPN4-201ENST00000263708 GGTA1PQ4G0N0 100 aa10.27□□□□□ -0.76
PTPN4-201ENST00000263708 JAM3Q9BX67 310 aa10.27□□□□□ -0.76
PTPN4-201ENST00000263708 MAP1LC3CQ9BXW4 147 aa10.27□□□□□ -0.76
PTPN4-201ENST00000263708 PCED1AQ9H1Q7 454 aa10.27□□□□□ -0.76
PTPN4-201ENST00000263708 KNDC1Q76NI1 1749 aa10.27□□□□□ -0.76
PTPN4-201ENST00000263708 CD37P11049 281 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 CST5P28325 142 aaPredicted RBP10.27□□□□□ -0.77
PTPN4-201ENST00000263708 RFLNAQ6ZTI6 216 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 MUC15Q8N387 334 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 FLYWCH2Q96CP2 140 aaKnown RBP10.27□□□□□ -0.77
PTPN4-201ENST00000263708 TREM2Q9NZC2 230 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 DOT1LQ8TEK3 1739 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 PHYHIPQ92561 330 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 LINC00469Q8N7U9 141 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 MRPL13Q9BYD1 178 aaKnown RBP10.27□□□□□ -0.77
PTPN4-201ENST00000263708 HAPLN2Q9GZV7 340 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 SRD5A3Q9H8P0 318 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 LTB4R2Q9NPC1 389 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 AMDHD2Q9Y303 409 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 SIAH2O43255 324 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 SFTA3P0C7M3 94 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 SHBQ15464 509 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 NPAS1Q99742 590 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 H0Y8X5 98 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 TCTAP57738 103 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 DGCR2P98153 550 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 ZNF766Q5HY98 468 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 LIPNQ5VXI9 398 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 SLC16A12Q6ZSM3 486 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 OR52N1Q8NH53 320 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 AKR7LQ8NHP1 331 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 ALKBH3Q96Q83 286 aaPredicted RBP10.27□□□□□ -0.77
PTPN4-201ENST00000263708 RASL11BQ9BPW5 248 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 WSB2Q9NYS7 404 aaPredicted RBP10.27□□□□□ -0.77
PTPN4-201ENST00000263708 RABAC1Q9UI14 185 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 MOB4Q9Y3A3 225 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 SLC2A10O95528 541 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 OR8A1Q8NGG7 326 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 NEIL1Q96FI4 390 aaPredicted RBP10.27□□□□□ -0.77
PTPN4-201ENST00000263708 HCSTQ9UBK5 93 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 CAMTA1Q9Y6Y1 1673 aa10.27□□□□□ -0.77
PTPN4-201ENST00000263708 FZD6O60353 706 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 LIMS3P0CW19 117 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 LIMS4P0CW20 117 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 EGR3Q06889 387 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 FCRL6Q6DN72 434 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 OR11G2Q8NGC1 345 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 TOLLIPQ9H0E2 274 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 DSCR3O14972 297 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 MELTFP08582 738 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 APELAP0DMC3 54 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 PDPNQ86YL7 162 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 PACRGQ96M98 296 aaPredicted RBP10.26□□□□□ -0.77
PTPN4-201ENST00000263708 SIRT5Q9NXA8 310 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 A4GNTQ9UNA3 340 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 R4GMQ9 66 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 COL1A1P02452 1464 aaPredicted RBP10.26□□□□□ -0.77
PTPN4-201ENST00000263708 KCNAB3O43448 404 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 PAFAH1B2P68402 229 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 B3GNT9Q6UX72 402 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 UBE2ZQ9H832 354 aaPredicted RBP10.26□□□□□ -0.77
PTPN4-201ENST00000263708 IL21Q9HBE4 155 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 MED29Q9NX70 200 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 TNXAQ16473 311 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 MAMSTRQ6ZN01 415 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 SPACA9Q96E40 222 aaPredicted RBP10.26□□□□□ -0.77
PTPN4-201ENST00000263708 OR4A8P0C604 315 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 OR4C3Q8NH37 302 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 C6orf106Q9H6K1 298 aaPredicted RBP10.26□□□□□ -0.77
PTPN4-201ENST00000263708 TAAR3PQ9P1P4 343 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 KCNMB2Q9Y691 235 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 RPL18Q07020 188 aaKnown RBP10.26□□□□□ -0.77
PTPN4-201ENST00000263708 ELFN2Q5R3F8 820 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 SLCO4C1Q6ZQN7 724 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 TMPRSS13Q9BYE2 586 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 S1PR5Q9H228 398 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 C3orf80F5H4A9 247 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 KIR2DS2P43631 304 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 ETV3LQ6ZN32 361 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 KCPQ6ZWJ8 1503 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 GSG1Q2KHT4 349 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 COL13A1Q5TAT6 717 aaPredicted RBP10.26□□□□□ -0.77
PTPN4-201ENST00000263708 PARM1Q6UWI2 310 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 MYOZ3Q8TDC0 251 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 BCL7CQ8WUZ0 217 aaPredicted RBP10.26□□□□□ -0.77
PTPN4-201ENST00000263708 C2orf50Q96LR7 162 aa10.26□□□□□ -0.77
PTPN4-201ENST00000263708 K7ESM1 405 aa10.25□□□□□ -0.77
PTPN4-201ENST00000263708 PRKNO60260 465 aaPredicted RBP10.25□□□□□ -0.77
PTPN4-201ENST00000263708 MGMTP16455 207 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms