RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 EGR1P18146 543 aa15.79■□□□□ 0.12
CCDC28A-203ENST00000617445 MAP2K3P46734 347 aa15.79■□□□□ 0.12
CCDC28A-203ENST00000617445 PRDX4Q13162 271 aa15.79■□□□□ 0.12
CCDC28A-203ENST00000617445 TMEM236Q5W0B7 351 aa15.79■□□□□ 0.12
CCDC28A-203ENST00000617445 BRD3OSQ6XYD6 125 aa15.79■□□□□ 0.12
CCDC28A-203ENST00000617445 TMEM86BQ8N661 226 aa15.79■□□□□ 0.12
CCDC28A-203ENST00000617445 BBS1Q8NFJ9 593 aa15.79■□□□□ 0.12
CCDC28A-203ENST00000617445 OR8B12Q8NGG6 310 aa15.79■□□□□ 0.12
CCDC28A-203ENST00000617445 OR5K1Q8NHB7 308 aa15.79■□□□□ 0.12
CCDC28A-203ENST00000617445 GATAD2BQ8WXI9 593 aa15.79■□□□□ 0.12
CCDC28A-203ENST00000617445 OR5P3Q8WZ94 311 aa15.79■□□□□ 0.12
CCDC28A-203ENST00000617445 UTP4Q969X6 686 aaKnown RBP15.79■□□□□ 0.12
CCDC28A-203ENST00000617445 RASSF4Q9H2L5 321 aa15.79■□□□□ 0.12
CCDC28A-203ENST00000617445 CNTD2Q9H8S5 307 aa15.79■□□□□ 0.12
CCDC28A-203ENST00000617445 IGHV3OR15-7A0A075B7D8 119 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 ZNF850A8MQ14 1090 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 ACKR3P25106 362 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 CSNK2BP67870 215 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 ROM1Q03395 351 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 DEFB112Q30KQ8 113 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 WDR38Q5JTN6 314 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 Q6YL49 198 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 ZDHHC23Q8IYP9 409 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 PIGCQ92535 297 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 RNF170Q96K19 258 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 LYZL4Q96KX0 146 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 TBX15Q96SF7 602 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 PKP2Q99959 881 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 SIRPDQ9H106 197 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 HAO2Q9NYQ3 351 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 RPUSD1Q9UJJ7 312 aaKnown RBP15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 KLHDC2Q9Y2U9 406 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 KPTNQ9Y664 436 aa15.78■□□□□ 0.12
CCDC28A-203ENST00000617445 CENPVL3A0A0U1RRI6 287 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 ZNF816-ZNF321PA0A0X1KG74 233 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 TMEM269A0A1B0GVZ9 245 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 NDUFB3O43676 98 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 ATP5HO75947 161 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 SFTPBP07988 381 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 DAPP51397 102 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 ACTR3P61158 418 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 POU4F2Q12837 409 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 BNIP1Q12981 228 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 PTGES3Q15185 160 aaKnown RBP15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 LRRC10Q5BKY1 277 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 ZNF679Q8IYX0 411 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 FAM81AQ8TBF8 368 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 ST8SIA4Q92187 359 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 MNTQ99583 582 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 CCL13Q99616 98 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 CADM1Q9BY67 442 aaKnown RBP15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 DNAJB11Q9UBS4 358 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 ENOPH1Q9UHY7 261 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 PCDHGB1Q9Y5G3 927 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 SOX21Q9Y651 276 aaPredicted RBP15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 POMT1Q9Y6A1 747 aa15.77■□□□□ 0.12
CCDC28A-203ENST00000617445 IGHV1-69DA0A0B4J2H0 117 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 A0A1B0GUS0 222 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 HOXA3O43365 443 aaPredicted RBP15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 SPRY1O43609 319 aaPredicted RBP15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 IGHV1-69P01742 117 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 TGM4P49221 684 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 ARF6P62330 175 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 ZNF829Q3KNS6 432 aaPredicted RBP15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 CDONQ4KMG0 1287 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 ZBTB37Q5TC79 503 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 KCTD8Q6ZWB6 473 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 CMTM4Q8IZR5 234 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 SCCPDHQ8NBX0 429 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 LY6G5BQ8NDX9 201 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 MED30Q96HR3 178 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 RAB3IPQ96QF0 476 aaPredicted RBP15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 PPP1R3EQ9H7J1 279 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 ACOXLQ9NUZ1 547 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 FAM206AQ9NX38 181 aa15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 H2AFY2Q9P0M6 372 aaPredicted RBP15.76■□□□□ 0.11
CCDC28A-203ENST00000617445 A0A1B0GVI7 797 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 CCDC182A6NF36 153 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 SLC22A31A6NKX4 558 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 G3V2T6 193 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 FCN3O75636 299 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 RIDAP52758 137 aaKnown RBP15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 HCCSP53701 268 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 RPL15P61313 204 aaKnown RBP15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 GNG3P63215 75 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 RIPPLY1Q0D2K3 151 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 ATP6AP1Q15904 470 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 CEACAM21Q3KPI0 293 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 STUMQ69YW2 141 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 MEPCEQ7L2J0 689 aaKnown RBP15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 KIR3DL3Q8N743 410 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 OR5A2Q8NGI9 324 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 NPRL2Q8WTW4 380 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 RPL3LQ92901 407 aaKnown RBP15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 OR8B4Q96RC9 309 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 CNN2Q99439 309 aaKnown RBP15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 SLITRK2Q9H156 845 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 KRT84Q9NSB2 600 aa15.75■□□□□ 0.11
CCDC28A-203ENST00000617445 MMP24Q9Y5R2 645 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms