RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 BMP4P12644 408 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 DNASE1P24855 282 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 GABRA5P31644 462 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 TNFAIP6P98066 277 aaPredicted RBP11.65□□□□□ -0.54
CD44-224ENST00000526669 FABP5Q01469 135 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 ACSM3Q53FZ2 586 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 ZMAT1Q5H9K5 638 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 ZBTB37Q5TC79 503 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 PRAMEF6Q5VXH4 476 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 ASPHD2Q6ICH7 369 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 TMEM91Q6ZNR0 172 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 FTMTQ8N4E7 242 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 MS4A15Q8N5U1 240 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 OR8S1Q8NH09 359 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 HPSE2Q8WWQ2 592 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 TRMT61AQ96FX7 289 aaKnown RBP11.65□□□□□ -0.54
CD44-224ENST00000526669 DERL3Q96Q80 235 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 OR2V2Q96R30 315 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 CHST5Q9GZS9 411 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 OR51E2Q9H255 320 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 MS4A5Q9H3V2 200 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 CXorf56Q9H5V9 222 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 EXOSC4Q9NPD3 245 aaKnown RBP11.65□□□□□ -0.54
CD44-224ENST00000526669 NOX4Q9NPH5 578 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 TREM2Q9NZC2 230 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 CGGBP1Q9UFW8 167 aaPredicted RBP11.65□□□□□ -0.54
CD44-224ENST00000526669 PDZD2O15018 2839 aa11.65□□□□□ -0.54
CD44-224ENST00000526669 YLPM1P49750 1951 aaKnown RBP11.65□□□□□ -0.55
CD44-224ENST00000526669 TRBV5-7A0A0A0MS05 114 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.64□□□□□ -0.55
CD44-224ENST00000526669 ANXA2P2A6NMY6 339 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 PIN1P1O15428 100 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 HPXP02790 462 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 CD36P16671 472 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 TNFSF4P23510 183 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 GADD45AP24522 165 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 THBS2P35442 1172 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 UBE2V2Q15819 145 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 TMEM42Q69YG0 159 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 CEACAM19Q7Z692 300 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 ITPKCQ96DU7 683 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 PERPQ96FX8 193 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 RNF170Q96K19 258 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 MEGF10Q96KG7 1140 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 SPACA5Q96QH8 159 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 HIST1H2AAQ96QV6 131 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 NKX3-1Q99801 234 aaPredicted RBP11.64□□□□□ -0.55
CD44-224ENST00000526669 MICU1Q9BPX6 476 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 SLC22A4Q9H015 551 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 RAB1BQ9H0U4 201 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 CXXC4Q9H2H0 198 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 ZCCHC4Q9H5U6 513 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 DECR2Q9NUI1 292 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 UFSP2Q9NUQ7 469 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 SCOCQ9UIL1 159 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 ZDHHC8Q9ULC8 765 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 MPC1Q9Y5U8 109 aa11.64□□□□□ -0.55
CD44-224ENST00000526669 TRAV8-7A0A075B6U6 113 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 IGKV1-9A0A0C4DH69 117 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 FAM230AA0A1W2PPH8 454 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 ZNF732B4DXR9 585 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 LYNX1G3V0Z9 82 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 H7C417 338 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 CDC14BO60729 498 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 GATBO75879 557 aaKnown RBP11.63□□□□□ -0.55
CD44-224ENST00000526669 SERPINA3P01011 423 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 TFAP2AP05549 437 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 GRPP07492 148 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 LYNX1P0DP58 116 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 ATF1P18846 271 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 PTH2RP49190 550 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 GPM6AP51674 278 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 MAB21L1Q13394 359 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 TRAM1Q15629 374 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 UNQ9370/PRO34162Q6UXP9 181 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 RNF144BQ7Z419 303 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 WDR86Q86TI4 376 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 CDH24Q86UP0 819 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 TGIF2LYQ8IUE0 185 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 SERPINA12Q8IW75 414 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 PARP16Q8N5Y8 322 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 OR51A2Q8NGJ7 313 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 ZNF420Q8TAQ5 688 aaPredicted RBP11.63□□□□□ -0.55
CD44-224ENST00000526669 PP6455Q8WZ26 134 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 OR5P3Q8WZ94 311 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 RFT1Q96AA3 541 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 C10orf35Q96D05 121 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 YIPF6Q96EC8 236 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 RTL8AQ9BWD3 113 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 PPIL3Q9H2H8 161 aaKnown RBP11.63□□□□□ -0.55
CD44-224ENST00000526669 SAP30LQ9HAJ7 183 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 NOP16Q9Y3C1 178 aaKnown RBP11.63□□□□□ -0.55
CD44-224ENST00000526669 CR1P17927 2039 aa11.63□□□□□ -0.55
CD44-224ENST00000526669 SETXQ7Z333 2677 aaKnown RBP11.63□□□□□ -0.55
CD44-224ENST00000526669 CSMD2Q7Z408 3487 aa11.62□□□□□ -0.55
CD44-224ENST00000526669 NOTCH2Q04721 2471 aa11.62□□□□□ -0.55
CD44-224ENST00000526669 LOC100506127A0A0U1RQW1 187 aa11.62□□□□□ -0.55
CD44-224ENST00000526669 LOC100289279A0A1B0GTE1 492 aa11.62□□□□□ -0.55
CD44-224ENST00000526669 A0A1B0GWJ7 208 aa11.62□□□□□ -0.55
CD44-224ENST00000526669 A6NLC8 198 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms