RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 GPR37O15354 613 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 NDUFA7O95182 113 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 CST4P01036 141 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 ACKR3P25106 362 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 RAG2P55895 527 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 PSMA6P60900 246 aaKnown RBP13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 CDK5Q00535 292 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 PRDX4Q13162 271 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 CDONQ4KMG0 1287 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 SLC35D3Q5M8T2 416 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 ATPAF1Q5TC12 328 aaPredicted RBP13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 CPOQ8IVL8 374 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 FGFRL1Q8N441 504 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 FAM216BQ8N7L0 139 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 LY6G5BQ8NDX9 201 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 OR4F5Q8NH21 305 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 SSMEM1Q8WWF3 244 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 SEH1LQ96EE3 360 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 NIPAL2Q9H841 368 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 BEX1Q9HBH7 125 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 C1RLQ9NZP8 487 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 ZNF391Q9UJN7 358 aa13.67□□□□□ -0.22
CCDC28B-204ENST00000469003 A0A1B0GVI7 797 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 ZNF850A8MQ14 1090 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 NDUFB3O43676 98 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 E2F6O75461 281 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 KNG1P01042 644 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 ANXA8P13928 327 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 SLC2A5P22732 501 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 TGM4P49221 684 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 RPL15P61313 204 aaKnown RBP13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 STUMQ69YW2 141 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 VMO1Q7Z5L0 202 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 HS3ST5Q8IZT8 346 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 SCCPDHQ8NBX0 429 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 OR8B12Q8NGG6 310 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 TBC1D15Q8TC07 691 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 OR5P3Q8WZ94 311 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 LYZL4Q96KX0 146 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 DNTTIP1Q9H147 329 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 HAO2Q9NYQ3 351 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 KLHDC2Q9Y2U9 406 aa13.66□□□□□ -0.22
CCDC28B-204ENST00000469003 A0A0U1RQK1 487 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 AMY2BP19961 511 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 ALOX5APP20292 161 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 RELBQ01201 579 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 LRRC10Q5BKY1 277 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 FAM76BQ5HYJ3 339 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 METAP1DQ6UB28 335 aaPredicted RBP13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 TREML4Q6UXN2 200 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 LDLRAD3Q86YD5 345 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 KIR3DL3Q8N743 410 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 BBS1Q8NFJ9 593 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 HPSE2Q8WWQ2 592 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 WFDC12Q8WWY7 111 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 PIGCQ92535 297 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 DYRK2Q92630 601 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 RPL3LQ92901 407 aaKnown RBP13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 RNF170Q96K19 258 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 RAB3IPQ96QF0 476 aaPredicted RBP13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 PKP2Q99959 881 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 TEX12Q9BXU0 123 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 FGF23Q9GZV9 251 aaPredicted RBP13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 YY1AP1Q9H869 796 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 SLC25A19Q9HC21 320 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 ONECUT1Q9UBC0 465 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 DNAJB11Q9UBS4 358 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 LAMP5Q9UJQ1 280 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 LRP12Q9Y561 859 aa13.65□□□□□ -0.22
CCDC28B-204ENST00000469003 NKX6-3A6NJ46 265 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 PRKACGP22612 351 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 RPS7P62081 194 aaKnown RBP13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 IKZF1Q13422 519 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 OLFML2AQ68BL7 652 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 KCTD8Q6ZWB6 473 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 KRT74Q7RTS7 529 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 KRT77Q7Z794 578 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 PDZD9Q8IXQ8 264 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 ZDHHC23Q8IYP9 409 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 CMTM4Q8IZR5 234 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 PIP4P2Q8N4L2 257 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 OR5T2Q8NGG2 359 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 C8orf46Q8TAG6 207 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 DCTN5Q9BTE1 182 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 YIPF3Q9GZM5 350 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 WDR13Q9H1Z4 485 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 SNTG1Q9NSN8 517 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 DNAJB9Q9UBS3 223 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 TRRAPQ9Y4A5 3859 aa13.64□□□□□ -0.23
CCDC28B-204ENST00000469003 CLPSL1A2RUU4 121 aa13.63□□□□□ -0.23
CCDC28B-204ENST00000469003 ACOD1A6NK06 481 aa13.63□□□□□ -0.23
CCDC28B-204ENST00000469003 FKBP6O75344 327 aa13.63□□□□□ -0.23
CCDC28B-204ENST00000469003 IGHV4-59P01825 116 aa13.63□□□□□ -0.23
CCDC28B-204ENST00000469003 DCTDP32321 178 aa13.63□□□□□ -0.23
CCDC28B-204ENST00000469003 IER3P46695 156 aa13.63□□□□□ -0.23
CCDC28B-204ENST00000469003 MAP2K3P46734 347 aa13.63□□□□□ -0.23
CCDC28B-204ENST00000469003 GMFBP60983 142 aa13.63□□□□□ -0.23
CCDC28B-204ENST00000469003 CBX1P83916 185 aa13.63□□□□□ -0.23
CCDC28B-204ENST00000469003 DEFA6Q01524 100 aa13.63□□□□□ -0.23
CCDC28B-204ENST00000469003 APOFQ13790 326 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms