RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 MEF2DQ14814 521 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 TNXAQ16473 311 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 ALKBH6Q3KRA9 238 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 MOGAT3Q86VF5 341 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 NHLRC2Q8NBF2 726 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 NFAM1Q8NET5 270 aaPredicted RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 HSD17B10Q99714 261 aaKnown RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 CCDC106Q9BWC9 280 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 PRR14Q9BWN1 585 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 REG4Q9BYZ8 158 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 NINJ2Q9NZG7 142 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 GNG13Q9P2W3 67 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 TINAGQ9UJW2 476 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 RPH3ALQ9UNE2 315 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 TRAV30A0A087WSZ9 112 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 LOC101059948A0A1B0GTJ6 334 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 A6NNC1 897 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 H3BSA7 217 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 TNFSF13O75888 250 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 F12P00748 615 aaPredicted RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 ZNF688P0C7X2 276 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 NR4A2P43354 598 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 ISL1P61371 349 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 DUSP7Q16829 419 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 Q6ZNB5 142 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 CA13Q8N1Q1 262 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 ARHGEF39Q8N4T4 335 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 LSMEM1Q8N8F7 131 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 COPS9Q8WXC6 57 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 RASL10BQ96S79 203 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 OR51E2Q9H255 320 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 SSU72Q9NP77 194 aaKnown RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 GLTPQ9NZD2 209 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 PIPOXQ9P0Z9 390 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 RCL1Q9Y2P8 373 aaKnown RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 hCG_38984A0A1B0GV85 526 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ICOSLGO75144 302 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 MOSPD3O75425 235 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ONECUT2O95948 504 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 WNT2P09544 360 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 RFX2P48378 723 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 TNFSF10P50591 281 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 AESQ08117 197 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 UNC119Q13432 240 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 C9orf66Q5T8R8 295 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 SKA3Q8IX90 412 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 PGBD5Q8N414 524 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ZIC4Q8N9L1 334 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 OR13J1Q8NGT2 312 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 NT5CQ8TCD5 201 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 HTRA1Q92743 480 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ARPC1AQ92747 370 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 GTF2H4Q92759 462 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ZNF714Q96N38 554 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 PIP5K1AQ99755 562 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 MS4A8Q9BY19 250 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 OR1A1Q9P1Q5 309 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 OR52A1Q9UKL2 312 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 SONP18583 2426 aaKnown RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 SETD1AO15047 1707 aaKnown RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 CASP8AP2Q9UKL3 1982 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 TRGV2A0A075B6R0 118 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 CXorf49A8MYA2 514 aaPredicted RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 SHOX2O60902 331 aaPredicted RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 FCGR3BO75015 233 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ZIC2O95409 532 aaPredicted RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 PNPP00491 289 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 HPRP00739 348 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 GCGP01275 180 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 CAV2P51636 162 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 C21orf58P58505 322 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 MRPS11P82912 194 aaKnown RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 RHEBQ15382 184 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 CD226Q15762 336 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ZBTB46Q86UZ6 589 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 RNF2Q99496 336 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 LIN28AQ9H9Z2 209 aaKnown RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 RANGRFQ9HD47 186 aaPredicted RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 MRPL22Q9NWU5 206 aaKnown RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 GMPR2Q9P2T1 348 aaKnown RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 FETUBQ9UGM5 382 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 VSIG4Q9Y279 399 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 IGHV5-51A0A0C4DH38 117 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 A0A1W2PNR3 127 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 C20orf202A1L168 122 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ASPDHA6ND91 283 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 TMEM262E9PQX1 116 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 J3QR06 171 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 GMDSO60547 372 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 CLDN1O95832 211 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 GUSBP08236 651 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ZNF140P52738 457 aaPredicted RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 PROX2Q3B8N5 592 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 LRRC37A5PQ49AS3 106 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 UBE2UQ5VVX9 321 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 B3GNT9Q6UX72 402 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 ABHD12Q8N2K0 398 aa3.62□□□□□ -1.83
USH2A-202ENST00000366942 LILRA3Q8N6C8 439 aaPredicted RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 ITLN2Q8WWU7 325 aaPredicted RBP3.62□□□□□ -1.83
USH2A-202ENST00000366942 BCL2L2Q92843 193 aaPredicted RBP3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms