RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 FAM25AB3EWG3 89 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 FAM25CB3EWG5 89 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 FAM25GB3EWG6 89 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 CST4P01036 141 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 APOA1P02647 267 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 MPV17P39210 176 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 OR3A4PP47883 348 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 PPP5CP53041 499 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 CNN3Q15417 329 aaKnown RBP15.97■□□□□ 0.15
CLN3-206ENST00000360019 ZNF79Q15937 498 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 UBE2NLQ5JXB2 153 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 KLF14Q8TD94 323 aaPredicted RBP15.97■□□□□ 0.15
CLN3-206ENST00000360019 ITFG2Q969R8 447 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 RFT1Q96AA3 541 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 SOSTQ9BQB4 213 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 PAPOLGQ9BWT3 736 aaKnown RBP15.97■□□□□ 0.15
CLN3-206ENST00000360019 BCL2L14Q9BZR8 327 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 EXTL2Q9UBQ6 330 aa15.97■□□□□ 0.15
CLN3-206ENST00000360019 LOC100289279A0A1B0GTE1 492 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 FABP12A6NFH5 140 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 CRYAAP02489 173 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 PRB1P04280 392 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 RAC2P15153 192 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 ARSBP15848 533 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 C4orf17Q53FE4 359 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 PLCXD3Q63HM9 321 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 FAM131AQ6UXB0 335 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 UNQ6126/PRO20091Q6UXV3 157 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 MOB3CQ70IA8 216 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 WFDC8Q8IUA0 241 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 DTX3Q8N9I9 347 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 OR4M1Q8NGD0 313 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 CA5BP1Q8WTZ4 195 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 RNASE6Q93091 150 aaKnown RBP15.96■□□□□ 0.15
CLN3-206ENST00000360019 BORCS5Q969J3 196 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 CMTM3Q96MX0 182 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 WFIKKN1Q96NZ8 548 aa15.96■□□□□ 0.15
CLN3-206ENST00000360019 IGKV1-27A0A075B6S5 117 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 TMEM272A0A1B0GTI8 110 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 PPP3CBP16298 524 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 CD40P25942 277 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 GRNP28799 593 aaKnown RBP15.96■□□□□ 0.14
CLN3-206ENST00000360019 CD40LGP29965 261 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 EFNB2P52799 333 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 PSG7Q13046 419 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 PRDX4Q13162 271 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 DCTN2Q13561 401 aaKnown RBP15.96■□□□□ 0.14
CLN3-206ENST00000360019 RIN1Q13671 783 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 ALKBH6Q3KRA9 238 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 ANGPTL5Q86XS5 388 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 CMTM4Q8IZR5 234 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 FTMTQ8N4E7 242 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 SYNPRQ8TBG9 265 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 GPER1Q99527 375 aa15.96■□□□□ 0.14
CLN3-206ENST00000360019 FGF23Q9GZV9 251 aaPredicted RBP15.96■□□□□ 0.14
CLN3-206ENST00000360019 FAM230AA0A1W2PPH8 454 aa15.95■□□□□ 0.14
CLN3-206ENST00000360019 LDLRAD4O15165 306 aa15.95■□□□□ 0.14
CLN3-206ENST00000360019 PRKACBP22694 351 aa15.95■□□□□ 0.14
CLN3-206ENST00000360019 AWAT2Q6E213 333 aa15.95■□□□□ 0.14
CLN3-206ENST00000360019 SSX8Q7RTT4 187 aa15.95■□□□□ 0.14
CLN3-206ENST00000360019 BIVMQ86UB2 503 aa15.95■□□□□ 0.14
CLN3-206ENST00000360019 SNX29P2Q8IUI4 249 aa15.95■□□□□ 0.14
CLN3-206ENST00000360019 OR5D18Q8NGL1 313 aa15.95■□□□□ 0.14
CLN3-206ENST00000360019 HPSE2Q8WWQ2 592 aa15.95■□□□□ 0.14
CLN3-206ENST00000360019 DVL3Q92997 716 aaPredicted RBP15.95■□□□□ 0.14
CLN3-206ENST00000360019 HAVCR1Q96D42 359 aa15.95■□□□□ 0.14
CLN3-206ENST00000360019 C1orf147Q96MC9 270 aaPredicted RBP15.95■□□□□ 0.14
CLN3-206ENST00000360019 TECTBQ96PL2 329 aa15.95■□□□□ 0.14
CLN3-206ENST00000360019 SDHCQ99643 169 aaPredicted RBP15.95■□□□□ 0.14
CLN3-206ENST00000360019 ABCG5Q9H222 651 aa15.95■□□□□ 0.14
CLN3-206ENST00000360019 RHBDL2Q9NX52 303 aa15.95■□□□□ 0.14
CLN3-206ENST00000360019 MYEF2Q9P2K5 600 aaKnown RBP15.95■□□□□ 0.14
CLN3-206ENST00000360019 ATP6V1G2-DDX39BF2Z307 99 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 TUBG1P23258 451 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 MMP15P51511 669 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 MTCP1P56278 107 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 NKX6-1P78426 367 aaPredicted RBP15.94■□□□□ 0.14
CLN3-206ENST00000360019 SNTB2Q13425 540 aaKnown RBP15.94■□□□□ 0.14
CLN3-206ENST00000360019 SNTB1Q13884 538 aaKnown RBP15.94■□□□□ 0.14
CLN3-206ENST00000360019 OR10K2Q6IF99 312 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 MTFR2Q6P444 385 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 TMEM108Q6UXF1 575 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 ZDHHC23Q8IYP9 409 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 BORCS8Q96FH0 119 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 SRRQ9GZT4 340 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 TUBG2Q9NRH3 451 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 FZR1Q9UM11 496 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 MRPS28Q9Y2Q9 187 aaKnown RBP15.94■□□□□ 0.14
CLN3-206ENST00000360019 ANKHD1Q8IWZ3 2542 aaKnown RBP15.94■□□□□ 0.14
CLN3-206ENST00000360019 ANKRD30BLA7E2S9 258 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 IQCF6A8MYZ5 107 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 RBP2P50120 134 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 FUT6P51993 359 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 ART1P52961 327 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 ZP1P60852 638 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 MSMPQ1L6U9 139 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 METAP1DQ6UB28 335 aaPredicted RBP15.94■□□□□ 0.14
CLN3-206ENST00000360019 GLIPR1L1Q6UWM5 242 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 LHFPL2Q6ZUX7 228 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 C1orf174Q8IYL3 243 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms