RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 RPL3LQ92901 407 aaKnown RBP15.27■□□□□ 0.04
CLN3-202ENST00000355477 TECTBQ96PL2 329 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 PKP2Q99959 881 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 GABARAPL3Q9BY60 117 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 RIBC2Q9H4K1 309 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 TRIM36Q9NQ86 728 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 HAO2Q9NYQ3 351 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 ERVK-18Q9QC07 812 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 ENOPH1Q9UHY7 261 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 ZNF391Q9UJN7 358 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 IKZF2Q9UKS7 526 aa15.27■□□□□ 0.04
CLN3-202ENST00000355477 SOX21Q9Y651 276 aaPredicted RBP15.27■□□□□ 0.04
CLN3-202ENST00000355477 H3BNX3 289 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 NDUFA2O43678 99 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 IGLV3-1P01715 115 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 PPIAL4GP0DN37 164 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 NPY4RP50391 375 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 RIDAP52758 137 aaKnown RBP15.26■□□□□ 0.03
CLN3-202ENST00000355477 FAM76BQ5HYJ3 339 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 DMRTC1Q5HYR2 192 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 CCDC121Q6ZUS5 278 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 KRT74Q7RTS7 529 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 SIGLECL1Q8N7X8 197 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 HPSE2Q8WWQ2 592 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 UPRTQ96BW1 309 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 RNF170Q96K19 258 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 RTL8AQ9BWD3 113 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 GPR84Q9NQS5 396 aa15.26■□□□□ 0.03
CLN3-202ENST00000355477 A0A1B0GW55 424 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 DUX4L2P0CJ85 424 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 DUX4L3P0CJ86 424 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 DUX4L4P0CJ87 422 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 DUX4L5P0CJ88 424 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 DUX4L6P0CJ89 424 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 DUX4L7P0CJ90 424 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 CFHR2P36980 270 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 MAP2K3P46734 347 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 FGF12P61328 243 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 DUX4L9Q6RFH8 374 aaPredicted RBP15.25■□□□□ 0.03
CLN3-202ENST00000355477 PLEKHG7Q6ZR37 379 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 SSX6Q7RTT6 188 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 GID4Q8IVV7 300 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 FGFRL1Q8N441 504 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 SCCPDHQ8NBX0 429 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 OR51G2Q8NGK0 314 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 FAM216AQ8WUB2 273 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 UBE2FQ969M7 185 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 FAM71F1Q96KD3 344 aaPredicted RBP15.25■□□□□ 0.03
CLN3-202ENST00000355477 ZNF48Q96MX3 618 aaPredicted RBP15.25■□□□□ 0.03
CLN3-202ENST00000355477 JMJD8Q96S16 334 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 RBM4BQ9BQ04 359 aaKnown RBP15.25■□□□□ 0.03
CLN3-202ENST00000355477 CLN6Q9NWW5 311 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 DUX4Q9UBX2 424 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 NUFIP1Q9UHK0 495 aaKnown RBP15.25■□□□□ 0.03
CLN3-202ENST00000355477 MRM2Q9UI43 246 aaKnown RBP15.25■□□□□ 0.03
CLN3-202ENST00000355477 NBEAL1Q6ZS30 2694 aa15.25■□□□□ 0.03
CLN3-202ENST00000355477 ZNF816-ZNF321PA0A0X1KG74 233 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 TMEM210A6NLX4 147 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 SRRM5B3KS81 715 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 TRIM77I1YAP6 450 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 DVL1O14640 695 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 TMPRSS2O15393 492 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 ENSAO43768 121 aaKnown RBP15.24■□□□□ 0.03
CLN3-202ENST00000355477 TTRP02766 147 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 MUC1P15941 1255 aaPredicted RBP15.24■□□□□ 0.03
CLN3-202ENST00000355477 GMFBP60983 142 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 MICBQ29980 383 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 ZNF829Q3KNS6 432 aaPredicted RBP15.24■□□□□ 0.03
CLN3-202ENST00000355477 CEP78Q5JTW2 689 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 KCTD8Q6ZWB6 473 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 COMMD2Q86X83 199 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 ZDHHC23Q8IYP9 409 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 FAM81AQ8TBF8 368 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 MNTQ99583 582 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 TBX5Q99593 518 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 CCL13Q99616 98 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 WDR13Q9H1Z4 485 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 ABCB9Q9NP78 766 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 KAAG1Q9UBP8 84 aa15.24■□□□□ 0.03
CLN3-202ENST00000355477 WARS2Q9UGM6 360 aaKnown RBP15.24■□□□□ 0.03
CLN3-202ENST00000355477 ZNF670-ZNF695F2Z2N8 137 aa15.23■□□□□ 0.03
CLN3-202ENST00000355477 APOL3O95236 402 aa15.23■□□□□ 0.03
CLN3-202ENST00000355477 PLATP00750 562 aa15.23■□□□□ 0.03
CLN3-202ENST00000355477 ALPLP05186 524 aa15.23■□□□□ 0.03
CLN3-202ENST00000355477 AMY2BP19961 511 aa15.23■□□□□ 0.03
CLN3-202ENST00000355477 HTR1FP30939 366 aa15.23■□□□□ 0.03
CLN3-202ENST00000355477 GPM6AP51674 278 aa15.23■□□□□ 0.03
CLN3-202ENST00000355477 EGR3Q06889 387 aa15.23■□□□□ 0.03
CLN3-202ENST00000355477 WDR38Q5JTN6 314 aa15.23■□□□□ 0.03
CLN3-202ENST00000355477 CD276Q5ZPR3 534 aa15.23■□□□□ 0.03
CLN3-202ENST00000355477 DOK3Q7L591 496 aa15.23■□□□□ 0.03
CLN3-202ENST00000355477 OR5T2Q8NGG2 359 aa15.23■□□□□ 0.03
CLN3-202ENST00000355477 EME1Q96AY2 570 aa15.23■□□□□ 0.03
CLN3-202ENST00000355477 MS4A7Q9GZW8 240 aaPredicted RBP15.23■□□□□ 0.03
CLN3-202ENST00000355477 GTF2A1LQ9UNN4 478 aa15.23■□□□□ 0.03
CLN3-202ENST00000355477 TRAV40A0A0B4J280 105 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 A0A1W2PQL4 384 aaPredicted RBP15.22■□□□□ 0.03
CLN3-202ENST00000355477 LOC110117498-PIK3R3F6TDL0 507 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 AKR7A2O43488 359 aa15.22■□□□□ 0.03
CLN3-202ENST00000355477 TFF1P04155 84 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms