RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 RNF10Q8N5U6 811 aaKnown RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 TRAM1L1Q8N609 369 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 ZNF565Q8N9K5 539 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 LRRC75AQ8NAA5 344 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 ATP6V1C2Q8NEY4 427 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 OR5T1Q8NG75 326 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 OR6K2Q8NGY2 324 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 SLC7A13Q8TCU3 470 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 IFT81Q8WYA0 676 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 TMEM54Q969K7 222 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 PPP1R14BQ96C90 147 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 SERPINB12Q96P63 405 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 ZNF251Q9BRH9 671 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 C7orf50Q9BRJ6 194 aaKnown RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 UPF3BQ9BZI7 483 aaKnown RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 API5Q9BZZ5 524 aaKnown RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 RACGAP1Q9H0H5 632 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 PARP12Q9H0J9 701 aaKnown RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 DEFB129Q9H1M3 183 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 OR2AG1Q9H205 316 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 SYT4Q9H2B2 425 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 VCX3BQ9H321 246 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 KIR3DX1Q9H7L2 352 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 UCK1Q9HA47 277 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 HMG20AQ9NP66 347 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 ISYNA1Q9NPH2 558 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 KCNJ16Q9NPI9 418 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 CCDC59Q9P031 241 aaKnown RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 YARS2Q9Y2Z4 477 aaKnown RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 TMEM14AQ9Y6G1 99 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 V9GYY9 64 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 ANKRD17O75179 2603 aaKnown RBP1.56□□□□□ -2.16
CD44-239ENST00000639002 ZNF407Q9C0G0 2248 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 SCN4AP35499 1836 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 CEMIPQ8WUJ3 1361 aa1.56□□□□□ -2.16
CD44-239ENST00000639002 IGHV5-10-1A0A0J9YXX1 117 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 A0A1W2PPV9 198 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 GOLGA8IPA6NC78 632 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 LYRM9A8MSI8 78 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 PLPP1O14494 284 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 ITGB1BP1O14713 200 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 EIF4E2O60573 245 aaKnown RBP1.55□□□□□ -2.16
CD44-239ENST00000639002 VAPBO95292 243 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 PLEKHA8P1O95397 391 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 C1orf105O95561 183 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 LDOC1O95751 146 aaPredicted RBP1.55□□□□□ -2.16
CD44-239ENST00000639002 LSM8O95777 96 aaKnown RBP1.55□□□□□ -2.16
CD44-239ENST00000639002 CST4P01036 141 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 HLA-DPB1P04440 258 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 GLAP06280 429 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 IL32P24001 234 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 CFHR2P36980 270 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 P2RY2P41231 377 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 SSR4P51571 173 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 CEBPGP53567 150 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 MYL6P60660 151 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 DSTNP60981 165 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 MAGOHP61326 146 aaKnown RBP1.55□□□□□ -2.16
CD44-239ENST00000639002 STXBP1P61764 594 aaKnown RBP1.55□□□□□ -2.16
CD44-239ENST00000639002 ACTG2P63267 376 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 LOXL1Q08397 574 aaPredicted RBP1.55□□□□□ -2.16
CD44-239ENST00000639002 CDC20Q12834 499 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 GNA13Q14344 377 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 PIGHQ14442 188 aaPredicted RBP1.55□□□□□ -2.16
CD44-239ENST00000639002 TRAM2Q15035 370 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 TSC22D1Q15714 1073 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 ATP6V1FQ16864 119 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 RGS21Q2M5E4 152 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 PGGHGQ32M88 737 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 SOHLH1Q5JUK2 328 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 THOC7Q6I9Y2 204 aaKnown RBP1.55□□□□□ -2.16
CD44-239ENST00000639002 ANKRD26P1Q6NSI1 321 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 FAM151BQ6UXP7 276 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 TEX43Q6ZNM6 134 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 NCCRP1Q6ZVX7 275 aaPredicted RBP1.55□□□□□ -2.16
CD44-239ENST00000639002 SSX7Q7RTT5 188 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 OR2W3Q7Z3T1 314 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 DCXRQ7Z4W1 244 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 BBS7Q8IWZ6 715 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 CMTM1Q8IZ96 169 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 SYS1Q8N2H4 156 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 OR52E5Q8NH55 327 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 OR4S2Q8NH73 311 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 OR5K2Q8NHB8 316 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 NUBPLQ8TB37 319 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 ZNF502Q8TBZ5 544 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 LGALS14Q8TCE9 139 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 CACNG8Q8WXS5 425 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 ING5Q8WYH8 240 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 CREB3L1Q96BA8 519 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 ZNF514Q96K75 400 aaPredicted RBP1.55□□□□□ -2.16
CD44-239ENST00000639002 DNAJC1Q96KC8 554 aaKnown RBP1.55□□□□□ -2.16
CD44-239ENST00000639002 ZFP3Q96NJ6 502 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 RNF157Q96PX1 679 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 ZNF382Q96SR6 550 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 CIB1Q99828 191 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 RNF5Q99942 180 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 TIMM29Q9BSF4 260 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 COPS4Q9BT78 406 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 MAP1LC3CQ9BXW4 147 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms