RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 NID1P14543 1247 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 HTR3DQ70Z44 454 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 PGBD5Q8N414 524 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 LDLRAD4O15165 306 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 LIPFP07098 398 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 MELTFP08582 738 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 SNRPCP09234 159 aaKnown RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 HOXC12P31275 282 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 NPSR1Q6W5P4 371 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 HFE2Q6ZVN8 426 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 ARRDC1Q8N5I2 433 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 TMEM156Q8N614 296 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 HMGCLL1Q8TB92 370 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 NPTNQ9Y639 398 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 COLEC10Q9Y6Z7 277 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 CASP8AP2Q9UKL3 1982 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 SRSF4Q08170 494 aaKnown RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 RPL7L1Q6DKI1 246 aaKnown RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 PAQR6Q6TCH4 344 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 Q6ZSR9 355 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 AMZ2Q86W34 360 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 RNASEH2CQ8TDP1 164 aaKnown RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 BARHL1Q9BZE3 327 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 NAT8BQ9UHF3 227 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 ADAMTS7Q9UKP4 1686 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 ZNF737O75373 536 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 HSPB1P04792 205 aaKnown RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 FCER1GP30273 86 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 FAM189BP81408 668 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 HOXB9P17482 250 aaPredicted RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 GLRA1P23415 457 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 MPZP25189 248 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 OTX2P32243 289 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 SLC6A11P48066 632 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 ZNF774Q6NX45 483 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 VASH2Q86V25 355 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 PNKDQ8N490 385 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 TMEM239Q8WW34 195 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 ADAMTS5Q9UNA0 930 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 LAMTOR2Q9Y2Q5 125 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 C9J4A7 227 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 TMEM262E9PQX1 116 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 F12P00748 615 aaPredicted RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 HOXA6P31267 233 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 FXYD4P59646 89 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 CTXN3Q4LDR2 81 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 DHRS11Q6UWP2 260 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 TMEM108Q6UXF1 575 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 ATOH8Q96SQ7 321 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 KCNK12Q9HB15 430 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 CNIH1O95406 144 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 IGHA1P01876 353 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 COX5AP20674 150 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 F2RP25116 425 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 CLECL1Q8IZS7 167 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 ISG20Q96AZ6 181 aaKnown RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 BOD1Q96IK1 185 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 SEPSECSQ9HD40 501 aaKnown RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 MANBALQ9NQG1 85 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 ZNF337Q9Y3M9 751 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 TANC1Q9C0D5 1861 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 SIP14410 1827 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 PRAMEF26H0Y7S4 382 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 FOXE1O00358 373 aaPredicted RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 CEBPBP17676 345 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 TRA2BP62995 288 aaKnown RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 PLCXD2Q0VAA5 305 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 PRRT3Q5FWE3 981 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 PRAMEF5Q5TYX0 476 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 PRAMEF6Q5VXH4 476 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 CARD17Q5XLA6 110 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 LCN15Q6UWW0 184 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 FAM110BQ8TC76 370 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 MAP1LC3CQ9BXW4 147 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 SPG21Q9NZD8 308 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 MARCH4Q9P2E8 410 aaPredicted RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 TNFRSF10CO14798 259 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 OR2Y1Q8NGV0 311 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 NPY6RQ99463 290 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 ZNF442Q9H7R0 627 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 GPR55Q9Y2T6 319 aaPredicted RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 PIKFYVEQ9Y2I7 2098 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 C9orf170A2RU37 121 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 NPIPB8E9PQR5 432 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 CTNSO60931 367 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 NPIPB7O75200 414 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 PGA4P0DJD7 388 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 PGA5P0DJD9 388 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 G6PCP35575 357 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 SLC25A35Q3KQZ1 300 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 HIKESHIQ53FT3 197 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 APIPQ96GX9 242 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 WDR13Q9H1Z4 485 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 OR1A1Q9P1Q5 309 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 C17orf102A2RUQ5 167 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 ATP1B2P14415 290 aaPredicted RBP4.48□□□□□ -1.69
VPS13D-213ENST00000613099 IL10RAQ13651 578 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 HES1Q14469 280 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 NXPE4Q6UWF7 544 aa4.48□□□□□ -1.69
VPS13D-213ENST00000613099 C1SP09871 688 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms