RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 SNIP1Q8TAD8 396 aaKnown RBP16.49■□□□□ 0.23
USP39-202ENST00000409025 AQP3Q92482 292 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 PIGTQ969N2 578 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 TRIB1Q96RU8 372 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 ZMAT3Q9HA38 289 aaKnown RBP16.49■□□□□ 0.23
USP39-202ENST00000409025 GPR173Q9NS66 373 aa16.49■□□□□ 0.23
USP39-202ENST00000409025 C7orf66A4D0T2 115 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 CDC14BO60729 498 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 ALDH3B1P43353 468 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 RAB1AP62820 205 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 ZNF92Q03936 586 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 CNN3Q15417 329 aaKnown RBP16.48■□□□□ 0.23
USP39-202ENST00000409025 ZNF260Q3ZCT1 412 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 FAAP20Q6NZ36 180 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 Q6ZTK2 550 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 CDH24Q86UP0 819 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 OR1K1Q8NGR3 316 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 OR10R2Q8NGX6 335 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 SPSB1Q96BD6 273 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 TMEM59Q9BXS4 323 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 CST11Q9H112 138 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 LPAR5Q9H1C0 372 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 NKIRAS2Q9NYR9 191 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 ING4Q9UNL4 249 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 RTTNQ86VV8 2226 aa16.48■□□□□ 0.23
USP39-202ENST00000409025 LOC100509620A0A075B734 347 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 hCG_38984A0A1B0GV85 526 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 TMEM235A6NFC5 223 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 EDN3P14138 238 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 STOMP27105 288 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 FAM3AP98173 230 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 PLP2Q04941 152 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 CDNFQ49AH0 187 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 CLVS2Q5SYC1 327 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 COLCA1Q6ZS62 124 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 TMEM104Q8NE00 496 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 OR5D18Q8NGL1 313 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 OR4C16Q8NGL9 310 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 TNFAIP8L1Q8WVP5 186 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 CMBLQ96DG6 245 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 CPNE2Q96FN4 548 aaPredicted RBP16.47■□□□□ 0.23
USP39-202ENST00000409025 S100A13Q99584 98 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 DMXL1Q9Y485 3027 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 TNRC6AQ8NDV7 1962 aaKnown RBP16.47■□□□□ 0.23
USP39-202ENST00000409025 ZNF503-AS2A6NEH8 195 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 CRTAPO75718 401 aaPredicted RBP16.47■□□□□ 0.23
USP39-202ENST00000409025 WISP2O76076 250 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 NAT2P11245 290 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 CCNOP22674 350 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 PRKACBP22694 351 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 TAS2R19P59542 299 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 CD83Q01151 205 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 TNK1Q13470 666 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 GSG1Q2KHT4 349 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 SLC22A6Q4U2R8 563 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 CRIP3Q6Q6R5 217 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 ZNF782Q6ZMW2 699 aaPredicted RBP16.47■□□□□ 0.23
USP39-202ENST00000409025 TMEM229BQ8NBD8 167 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 NANOS1Q8WY41 292 aaKnown RBP16.47■□□□□ 0.23
USP39-202ENST00000409025 SPSB4Q96A44 273 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 URM1Q9BTM9 101 aaKnown RBP16.47■□□□□ 0.23
USP39-202ENST00000409025 GHITMQ9H3K2 345 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 BANF2Q9H503 90 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 NOX3Q9HBY0 568 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 RANGRFQ9HD47 186 aaPredicted RBP16.47■□□□□ 0.23
USP39-202ENST00000409025 PLSCR2Q9NRY7 297 aa16.47■□□□□ 0.23
USP39-202ENST00000409025 C5orf49A4QMS7 147 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 WIPF3A6NGB9 483 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 PEX14O75381 377 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 IL18BPO95998 194 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 MELTFP08582 738 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 RCVRNP35243 200 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 FOXC1Q12948 553 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 OR8B8Q15620 311 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 LINC00303Q3SY05 128 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 STEAP1BQ6NZ63 245 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 GIMAP1Q8WWP7 306 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 BCL2L2Q92843 193 aaPredicted RBP16.46■□□□□ 0.23
USP39-202ENST00000409025 TAAR6Q96RI8 345 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 NICN1Q9BSH3 213 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 SELENOIQ9C0D9 397 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 MED28Q9H204 178 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 OR10A4Q9H209 315 aa16.46■□□□□ 0.23
USP39-202ENST00000409025 ZNF107Q9UII5 783 aaPredicted RBP16.46■□□□□ 0.23
USP39-202ENST00000409025 ELF5Q9UKW6 265 aaPredicted RBP16.46■□□□□ 0.23
USP39-202ENST00000409025 NRASP01111 189 aa16.45■□□□□ 0.22
USP39-202ENST00000409025 CD3DP04234 171 aa16.45■□□□□ 0.22
USP39-202ENST00000409025 MTCP1P56278 107 aa16.45■□□□□ 0.22
USP39-202ENST00000409025 ZFP69Q49AA0 526 aa16.45■□□□□ 0.22
USP39-202ENST00000409025 TMEM42Q69YG0 159 aa16.45■□□□□ 0.22
USP39-202ENST00000409025 GABRG1Q8N1C3 465 aa16.45■□□□□ 0.22
USP39-202ENST00000409025 OR5M9Q8NGP3 310 aa16.45■□□□□ 0.22
USP39-202ENST00000409025 OR8S1Q8NH09 359 aa16.45■□□□□ 0.22
USP39-202ENST00000409025 BEX2Q9BXY8 128 aa16.45■□□□□ 0.22
USP39-202ENST00000409025 OR51J1Q9H342 316 aa16.45■□□□□ 0.22
USP39-202ENST00000409025 TP63Q9H3D4 680 aaPredicted RBP16.45■□□□□ 0.22
USP39-202ENST00000409025 GVINP1Q7Z2Y8 2422 aa16.45■□□□□ 0.22
USP39-202ENST00000409025 ZNHIT1O43257 154 aa16.45■□□□□ 0.22
USP39-202ENST00000409025 PRAF2O60831 178 aa16.45■□□□□ 0.22
USP39-202ENST00000409025 NDUFB6O95139 128 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms