RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CDSNQ15517 529 aa12.24□□□□□ -0.45
SKA1-202ENST00000398452 MOGQ16653 247 aa12.24□□□□□ -0.45
SKA1-202ENST00000398452 SPATA46Q5T0L3 261 aa12.24□□□□□ -0.45
SKA1-202ENST00000398452 VHLLQ6RSH7 139 aa12.24□□□□□ -0.45
SKA1-202ENST00000398452 CROCCP3Q8IVE0 287 aa12.24□□□□□ -0.45
SKA1-202ENST00000398452 PLPP7Q8NBV4 271 aa12.24□□□□□ -0.45
SKA1-202ENST00000398452 CMBLQ96DG6 245 aa12.24□□□□□ -0.45
SKA1-202ENST00000398452 PLPPR2Q96GM1 343 aa12.24□□□□□ -0.45
SKA1-202ENST00000398452 LYZL4Q96KX0 146 aa12.24□□□□□ -0.45
SKA1-202ENST00000398452 TECTBQ96PL2 329 aa12.24□□□□□ -0.45
SKA1-202ENST00000398452 PCNX1Q96RV3 2341 aa12.24□□□□□ -0.45
SKA1-202ENST00000398452 TPK1Q9H3S4 243 aa12.24□□□□□ -0.45
SKA1-202ENST00000398452 ZCCHC4Q9H5U6 513 aa12.24□□□□□ -0.45
SKA1-202ENST00000398452 SLC7A11Q9UPY5 501 aa12.24□□□□□ -0.45
SKA1-202ENST00000398452 TRBV5-7A0A0A0MS05 114 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 TIMM8AO60220 97 aaPredicted RBP12.23□□□□□ -0.45
SKA1-202ENST00000398452 MAS1P04201 325 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 FAHP16930 419 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 FSTP19883 344 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 GRNP28799 593 aaKnown RBP12.23□□□□□ -0.45
SKA1-202ENST00000398452 SDC2P34741 201 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 MAGEB1P43366 347 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 RORCP51449 518 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 TFF3Q07654 80 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 SNTB1Q13884 538 aaKnown RBP12.23□□□□□ -0.45
SKA1-202ENST00000398452 HLXQ14774 488 aaPredicted RBP12.23□□□□□ -0.45
SKA1-202ENST00000398452 OR8B8Q15620 311 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 CLVS2Q5SYC1 327 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 NCMAPQ5T1S8 102 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 FAM27D1Q5T7N8 215 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 FOXB2Q5VYV0 432 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 GLT8D1Q68CQ7 371 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 FBXW12Q6X9E4 464 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 PARP16Q8N5Y8 322 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 NKAIN3Q8N8D7 197 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 OR56B2PQ8NGI1 322 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 NDNFQ8TB73 568 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 SYNPRQ8TBG9 265 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 PIGCQ92535 297 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 AP3S1Q92572 193 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 TRMT61AQ96FX7 289 aaKnown RBP12.23□□□□□ -0.45
SKA1-202ENST00000398452 DCUN1D5Q9BTE7 237 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 RNF167Q9H6Y7 350 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 ABCB9Q9NP78 766 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 TAS2R4Q9NYW5 299 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 NOP16Q9Y3C1 178 aaKnown RBP12.23□□□□□ -0.45
SKA1-202ENST00000398452 CMAHPQ9Y471 501 aa12.23□□□□□ -0.45
SKA1-202ENST00000398452 ITPR2Q14571 2701 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.22□□□□□ -0.45
SKA1-202ENST00000398452 A0A1W2PPW3 197 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 C5orf63A6NC05 138 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 DPRXA6NFQ7 191 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 ANKRD61A6NGH8 418 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 CD300LBA8K4G0 201 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 SULT1B1O43704 296 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 HCKP08631 526 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 BDKRB2P30411 391 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 FABP6P51161 128 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 SPCS2Q15005 226 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 CNPY1Q3B7I2 92 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 PLCXD3Q63HM9 321 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 C22orf34Q6ZV56 151 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 NUP37Q8NFH4 326 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 OR1M1Q8NGA1 313 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 OR13C9Q8NGT0 318 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 KLF14Q8TD94 323 aaPredicted RBP12.22□□□□□ -0.45
SKA1-202ENST00000398452 FAM222BQ8WU58 562 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 FOXRED1Q96CU9 486 aaPredicted RBP12.22□□□□□ -0.45
SKA1-202ENST00000398452 ADAT3Q96EY9 351 aaPredicted RBP12.22□□□□□ -0.45
SKA1-202ENST00000398452 PIK3IP1Q96FE7 263 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 PAPOLGQ9BWT3 736 aaKnown RBP12.22□□□□□ -0.45
SKA1-202ENST00000398452 CHST5Q9GZS9 411 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 TMEM138Q9NPI0 162 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 GPR160Q9UJ42 338 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 RNF115Q9Y4L5 304 aa12.22□□□□□ -0.45
SKA1-202ENST00000398452 KLF2Q9Y5W3 355 aaPredicted RBP12.22□□□□□ -0.45
SKA1-202ENST00000398452 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.21□□□□□ -0.45
SKA1-202ENST00000398452 PLSCR5A0PG75 271 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 A6NIN4 97 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 PRSS44E7EML9 344 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 J3QL48 77 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 PIN1P1O15428 100 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 NRASP01111 189 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 PRKACBP22694 351 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 TGFBR1P36897 503 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 KLF3P57682 345 aaPredicted RBP12.21□□□□□ -0.45
SKA1-202ENST00000398452 SPOCK1Q08629 439 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 MZT1Q08AG7 82 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 CEP78Q5JTW2 689 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 MBNL2Q5VZF2 373 aaKnown RBP12.21□□□□□ -0.45
SKA1-202ENST00000398452 OR2T2Q6IF00 324 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 ADAM5Q6NVV9 412 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 MOB3CQ70IA8 216 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 UTS2BQ765I0 119 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 PNLDC1Q8NA58 520 aaKnown RBP12.21□□□□□ -0.45
SKA1-202ENST00000398452 BHLHE23Q8NDY6 225 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 OR8S1Q8NH09 359 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 PIGTQ969N2 578 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 ORAI1Q96D31 301 aa12.21□□□□□ -0.45
SKA1-202ENST00000398452 HAVCR1Q96D42 359 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms